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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:7.2 nTPM
HPA:7.2 nTPM
GTEx:13.4 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:28.5 nTPM
Allen mouse:1.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Amygdala
nTPM: 7.2
1987 Female, age 91, left hemisphere 8.3
2517 Female, age 94, left hemisphere 7.6
2514 Male, age 75, right hemisphere 7.4
2695 Female, age 67, right hemisphere 6.5
2814 Male, age 76, right hemisphere 6.1
Basal amygdala
nTPM: 6.2
2609 Male, age 75, right hemisphere 6.8
2110 Male, age 80, left hemisphere 6.7
2243 Female, age 91, right hemisphere 6.5
1955 Male, age 76, both hemispheres 6.3
2685 Female, age 94, left hemisphere 5.7
2827 Female, age 67, right hemisphere 5.1
Central amygdala
nTPM: 6.8
2515 Male, age 75, right hemisphere 7.9
2701 Female, age 91, right hemisphere 7.3
1905 Male, age 76, both hemispheres 6.5
2239 Male, age 80, left hemisphere 6.2
2826 Female, age 94, left hemisphere 6.0
Corticomedial amygdala
nTPM: 6.7
2428 Male, age 75, right hemisphere 7.8
2242 Female, age 91, right hemisphere 7.2
2829 Male, age 80, left hemisphere 7.1
2429 Female, age 94, left hemisphere 6.7
2240 Male, age 76, both hemispheres 6.4
2535 Female, age 67, right hemisphere 5.2
Lateral amygdala
nTPM: 6.3
2255 Female, age 91, right hemisphere 6.8
2256 Male, age 80, left hemisphere 6.8
2516 Male, age 75, right hemisphere 6.7
1883 Male, age 76, both hemispheres 6.4
2534 Female, age 94, left hemisphere 5.8
2830 Female, age 67, right hemisphere 5.2
Stria terminalis, bed nucleus
nTPM: 6.4
2201 Male, age 74, unknown 6.8
2486 Female, age 94, both hemispheres 6.5
1974 Female, age 91, both hemispheres 6.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 13.4
Samples: 152

Max nTPM: 45.9
Min nTPM: 4.9
Std nTPM: 6.0
Median nTPM: 12.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 45.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 32.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 29.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 27.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 26.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 25.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 24.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 24.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 22.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 22.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 21.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 20.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 20.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 19.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 19.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 19.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 19.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 19.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 18.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 18.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 18.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 18.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 18.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 18.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 18.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 17.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 17.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 16.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 16.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 16.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 16.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 16.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 16.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 15.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 15.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 15.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 15.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 15.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 15.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 15.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 15.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 15.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 15.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 15.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 14.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 14.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 14.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 14.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 14.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 14.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 14.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 14.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 14.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 14.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 13.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 13.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 13.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 13.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 13.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 13.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 13.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 13.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 13.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 13.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 12.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 12.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 12.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 12.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 12.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 12.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 12.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 12.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 12.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 12.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 12.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 12.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 12.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 12.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 12.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 11.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 11.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 11.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 11.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 11.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 11.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 11.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 11.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 11.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 11.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 10.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 10.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 10.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 10.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 10.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 10.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 10.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 10.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 10.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 10.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 10.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 10.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 10.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 10.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 9.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 9.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 9.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 9.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 9.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 9.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 9.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 9.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 9.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 9.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 9.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 9.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 9.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 9.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 8.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 8.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 8.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 8.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 8.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 8.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 8.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 8.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 8.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 8.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 8.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 7.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 7.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 7.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 7.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 7.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 7.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 7.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 7.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 7.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 7.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 7.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 7.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 7.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 6.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 6.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 6.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 6.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 6.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 9.5
FF:10151-102I7 76 years, female 9.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.4
Pig sample Sample description nTPM
Amygdala
nTPM: 7.4
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.9
Sample A Female 8.4
Sample B Female 8.6
Sample C Male 6.8
Sample D Male 5.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.5
Samples: 4

Max nTPM: 32.3
Min nTPM: 23.4
Sample A Male 28.9
Sample B Male 29.2
Sample C Female 23.4
Sample D Female 32.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
70539159 Antisense, RP_050324_01_B12, Mouse strain C57BL/6J (56 days, male) 2.3
74047839 Antisense, RP_051214_02_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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