BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA:9.2 nTPM
GTEx:8.0 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:4.4 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.2
2288 Male, age 75, left hemisphere 8.8
2846 Female, age 79, unknown 8.8
1781 Male, age 74, unknown 8.7
2481 Female, age 94, left hemisphere 8.5
1854 Male, age 80, left hemisphere 8.1
1857 Female, age 85, left hemisphere 7.9
2289 Male, age 61, right hemisphere 7.9
2290 Female, age 72, unknown 7.1
Claustrum
nTPM: 9.2
2568 Male, age 61, both hemispheres 10.0
2198 Male, age 80, both hemispheres 9.9
2491 Male, age 75, both hemispheres 9.5
2284 Female, age 91, both hemispheres 9.4
2392 Female, age 94, both hemispheres 9.2
1956 Male, age 74, unknown 9.1
2645 Female, age 72, unknown 9.0
2196 Female, age 79, unknown 8.7
2292 Female, age 85, both hemispheres 7.8
Globus pallidus, externus
nTPM: 8.2
2772 Female, age 79, unknown 9.5
1996 Male, age 80, right hemisphere 8.5
2395 Male, age 75, both hemispheres 8.2
2646 Male, age 61, right hemisphere 8.0
2567 Female, age 72, unknown 6.9
Globus pallidus, internus
nTPM: 8.3
2287 Male, age 75, right hemisphere 9.4
1818 Male, age 74, unknown 9.0
2778 Female, age 91, both hemispheres 8.9
2037 Male, age 80, right hemisphere 8.2
2483 Female, age 94, right hemisphere 7.8
2566 Female, age 72, unknown 7.6
2111 Female, age 85, right hemisphere 7.1
Nucleus accumbens
nTPM: 7.8
2286 Male, age 75, left hemisphere 8.5
2732 Male, age 80, right hemisphere 8.2
1783 Male, age 74, unknown 7.9
2391 Female, age 94, left hemisphere 7.9
2698 Female, age 72, unknown 7.8
1856 Female, age 91, right hemisphere 7.7
1806 Female, age 85, left hemisphere 7.6
2824 Male, age 61, right hemisphere 6.9
Nucleus basalis of Meynert
nTPM: 7.5
2821 Male, age 75, both hemispheres 8.4
2569 Male, age 61, both hemispheres 7.6
2484 Female, age 94, left hemisphere 7.2
2393 Male, age 80, right hemisphere 7.0
Nucleus of the diagonal band
nTPM: 8.3
1812 Female, age 91, both hemispheres 9.1
2029 Male, age 61, right hemisphere 8.6
1979 Male, age 74, unknown 8.4
2775 Male, age 80, right hemisphere 8.0
2195 Female, age 85, both hemispheres 7.6
Olfactory tubercle
nTPM: 8.6
1846 Male, age 80, right hemisphere 8.9
2856 Male, age 75, right hemisphere 8.8
2487 Female, age 94, left hemisphere 8.5
1998 Female, age 91, both hemispheres 8.0
Putamen
nTPM: 8.0
1829 Male, age 74, unknown 8.5
2482 Female, age 94, left hemisphere 8.5
2647 Male, age 75, left hemisphere 8.5
1937 Female, age 91, right hemisphere 8.3
2466 Female, age 79, unknown 7.8
1838 Male, age 80, right hemisphere 7.5
2489 Female, age 72, unknown 6.9
Septal nuclei
nTPM: 8.9
2629 Female, age 94, right hemisphere 11.2
2199 Male, age 80, right hemisphere 10.3
2009 Female, age 91, both hemispheres 9.1
2031 Female, age 72, unknown 8.8
2394 Male, age 61, left hemisphere 8.3
1960 Male, age 74, unknown 7.5
2059 Female, age 85, both hemispheres 7.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.0
Samples: 246

Max nTPM: 22.1
Min nTPM: 3.0
Std nTPM: 2.5
Median nTPM: 7.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 22.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 16.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 15.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 15.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 15.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 15.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 14.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 14.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 14.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 14.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 13.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 17.5
Min nTPM: 2.9
Std nTPM: 2.1
Median nTPM: 6.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 17.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 15.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 13.5
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 13.5
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 13.4
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 13.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 12.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 11.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 11.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 11.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 10.9
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Brain - Putamen (basal ganglia)
Average nTPM: 6.7
Samples: 205

Max nTPM: 12.1
Min nTPM: 2.6
Std nTPM: 1.7
Median nTPM: 6.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 12.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 12.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 11.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 11.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 10.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 10.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 10.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 10.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 10.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 10.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.8
FF:10164-103B2 76 years, female 13.8
Globus pallidus
Scaled Tags Per Million: 18.7
FF:10175-103C4 60 years, female 21.3
FF:10161-103A8 76 years, female 16.2
Nucleus accumbens
Scaled Tags Per Million: 31.1
FF:10037-101F1 23-56 years, mixed 31.1
Putamen
Scaled Tags Per Million: 16.4
FF:10176-103C5 60 years, female 16.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.5
Sample A Female 5.2
Sample B Female 5.4
Sample C Male 7.3
Sample D Male 4.5
Putamen
nTPM: 3.9
Samples: 4

Max nTPM: 5.6
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 4.0
Sample C Male 5.6
Sample D Male 4.0
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.0
Sample A Female 4.0
Sample B Female 4.4
Sample C Male 3.0
Sample D Male 5.5
Ventral pallidum
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.3
Sample A Female 4.2
Sample B Female 4.1
Sample C Male 3.3
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.4
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.8
Sample A Male 0.9
Sample B Male 0.8
Sample C Female 2.3
Sample D Female 1.7
Septum
nTPM: 4.4
Samples: 4

Max nTPM: 5.4
Min nTPM: 2.8
Sample A Male 2.8
Sample B Male 5.4
Sample C Female 5.2
Sample D Female 4.1
Ventral forebrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.4
Sample A Male 1.9
Sample B Male 1.8
Sample C Female 1.4
Sample D Female 2.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
70218366 Antisense, RP_050519_03_H09, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.6
70218366 Antisense, RP_050519_03_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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