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NIPAL3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:46.1 nTPM
HPA:46.1 nTPM
GTEx:44.4 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:48.7 nTPM
Allen mouse:8.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039978
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Hippocampus
nTPM: 37.7
2860 Male, age 74, right hemisphere 43.2
2529 Female, age 94, left hemisphere 41.6
1898 Male, age 80, left hemisphere 40.6
2621 Female, age 67, right hemisphere 38.9
1911 Female, age 85, right hemisphere 34.0
2148 Female, age 91, left hemisphere 33.5
1855 Male, age 76, left hemisphere 31.9
Dentate gyrus
nTPM: 38.3
2530 Female, age 94, left hemisphere 54.6
2528 Male, age 74, both hemispheres 40.3
2010 Male, age 76, both hemispheres 34.8
2246 Female, age 85, both hemispheres 34.5
2531 Female, age 67, both hemispheres 33.9
1927 Female, age 91, both hemispheres 31.4
Entorhinal gyrus
nTPM: 46.1
2117 Female, age 91, right hemisphere 57.7
2686 Male, age 75, right hemisphere 49.2
2764 Male, age 80, right hemisphere 48.6
1938 Female, age 85, left hemisphere 43.1
2613 Female, age 94, left hemisphere 42.6
1787 Male, age 76, left hemisphere 35.8
Hippocampus, CA1
nTPM: 37.9
2343 Female, age 94, left hemisphere 62.1
2527 Male, age 74, both hemispheres 38.0
1873 Female, age 85, both hemispheres 35.8
2082 Female, age 91, right hemisphere 35.6
2749 Male, age 80, left hemisphere 32.0
2045 Male, age 76, both hemispheres 24.1
Hippocampus, CA2
nTPM: 39.1
1963 Male, age 80, left hemisphere 48.7
2437 Female, age 94, left hemisphere 44.2
2113 Female, age 91, right hemisphere 37.9
1940 Female, age 85, left hemisphere 36.5
1892 Male, age 76, both hemispheres 36.2
2342 Male, age 74, both hemispheres 31.0
Hippocampus, CA3
nTPM: 31.2
1891 Female, age 85, both hemispheres 39.8
1867 Male, age 76, both hemispheres 34.8
2436 Male, age 74, both hemispheres 33.8
2861 Female, age 67, both hemispheres 30.5
2620 Female, age 94, left hemisphere 25.4
2137 Male, age 80, left hemisphere 23.0
Parahippocampal cortex
nTPM: 38.3
2692 Male, age 74, both hemispheres 47.1
1990 Female, age 91, right hemisphere 45.3
1850 Male, age 80, both hemispheres 43.9
2532 Female, age 72, left hemisphere 43.8
1933 Female, age 85, both hemispheres 38.6
2693 Female, age 94, both hemispheres 35.5
2245 Female, age 91, both hemispheres 34.2
2622 Female, age 67, right hemisphere 31.9
2018 Male, age 76, both hemispheres 31.8
2718 Female, age 67, right hemisphere 31.1
Perirhinal gyrus
nTPM: 38.9
2519 Male, age 75, right hemisphere 47.8
1794 Male, age 80, right hemisphere 38.8
1847 Female, age 91, left hemisphere 37.6
2848 Male, age 76, right hemisphere 37.0
1841 Female, age 85, right hemisphere 36.9
2521 Female, age 94, right hemisphere 35.3
Subiculum
nTPM: 42.9
2438 Female, age 94, left hemisphere 47.7
1901 Male, age 80, both hemispheres 45.6
1977 Female, age 85, both hemispheres 44.2
2042 Male, age 76, both hemispheres 42.3
2619 Male, age 74, both hemispheres 41.5
2702 Female, age 67, right hemisphere 41.1
2729 Female, age 91, right hemisphere 38.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.4
Samples: 197

Max nTPM: 131.1
Min nTPM: 5.3
Std nTPM: 20.5
Median nTPM: 40.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 131.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 123.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 103.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 101.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 101.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 99.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 96.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 91.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 86.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 83.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 79.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.2
FF:10153-102I9 76 years, female 55.7
FF:10169-103B7 60 years, female 40.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 49.6
Samples: 4

Max nTPM: 57.9
Min nTPM: 39.7
Sample A Female 57.9
Sample B Female 52.1
Sample C Male 48.7
Sample D Male 39.7
Entorhinal cortex
nTPM: 40.6
Samples: 4

Max nTPM: 48.9
Min nTPM: 35.1
Sample A Female 39.2
Sample B Female 39.0
Sample C Male 48.9
Sample D Male 35.1
Subiculum
nTPM: 46.3
Samples: 4

Max nTPM: 50.1
Min nTPM: 42.9
Sample A Female 50.1
Sample B Female 42.9
Sample C Male 48.8
Sample D Male 43.3
Ventral hippocampus
nTPM: 44.0
Samples: 4

Max nTPM: 53.4
Min nTPM: 34.6
Sample A Female 42.0
Sample B Female 34.6
Sample C Male 53.4
Sample D Male 45.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.7
Samples: 4

Max nTPM: 65.8
Min nTPM: 41.8
Sample A Male 43.6
Sample B Male 43.7
Sample C Female 41.8
Sample D Female 65.8
Hippocampal formation
nTPM: 36.1
Samples: 4

Max nTPM: 40.8
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 36.0
Sample C Female 40.8
Sample D Female 36.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.3
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 8.3
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.