We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NIPAL3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • NIPAL3
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:43.6 nTPM
HPA:43.6 nTPM
GTEx:44.1 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:48.7 nTPM
Allen mouse:8.3 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA039978
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Hippocampus
nTPM: 34.0
2529 Female, age 94, left hemisphere 39.1
1898 Male, age 80, left hemisphere 38.0
2621 Female, age 67, right hemisphere 35.3
1911 Female, age 85, right hemisphere 31.9
2148 Female, age 91, left hemisphere 30.6
1855 Male, age 76, left hemisphere 29.1
Dentate gyrus
nTPM: 35.5
2530 Female, age 94, left hemisphere 52.3
2528 Male, age 74, both hemispheres 37.3
2246 Female, age 85, both hemispheres 32.4
2010 Male, age 76, both hemispheres 32.0
2531 Female, age 67, both hemispheres 30.5
1927 Female, age 91, both hemispheres 28.5
Entorhinal gyrus
nTPM: 43.6
2117 Female, age 91, right hemisphere 54.9
2686 Male, age 75, right hemisphere 46.3
2764 Male, age 80, right hemisphere 46.0
1938 Female, age 85, left hemisphere 41.3
2613 Female, age 94, left hemisphere 40.1
1787 Male, age 76, left hemisphere 33.0
Hippocampus, CA1
nTPM: 30.4
2527 Male, age 74, both hemispheres 35.0
1873 Female, age 85, both hemispheres 33.8
2082 Female, age 91, right hemisphere 32.7
2749 Male, age 80, left hemisphere 29.3
2045 Male, age 76, both hemispheres 21.2
Hippocampus, CA2
nTPM: 38.2
1963 Male, age 80, left hemisphere 46.2
2437 Female, age 94, left hemisphere 41.7
2249 Male, age 74, both hemispheres 38.5
2113 Female, age 91, right hemisphere 35.0
1940 Female, age 85, left hemisphere 34.5
1892 Male, age 76, both hemispheres 33.4
Hippocampus, CA3
nTPM: 28.5
1891 Female, age 85, both hemispheres 37.8
1867 Male, age 76, both hemispheres 32.0
2436 Male, age 74, both hemispheres 30.9
2861 Female, age 67, both hemispheres 27.2
2620 Female, age 94, left hemisphere 22.7
2137 Male, age 80, left hemisphere 20.2
Parahippocampal cortex
nTPM: 35.7
2692 Male, age 74, both hemispheres 44.2
1990 Female, age 91, right hemisphere 42.5
2532 Female, age 72, left hemisphere 42.0
1850 Male, age 80, both hemispheres 41.3
1933 Female, age 85, both hemispheres 36.7
2693 Female, age 94, both hemispheres 32.9
2245 Female, age 91, both hemispheres 31.3
2018 Male, age 76, both hemispheres 28.9
2622 Female, age 67, right hemisphere 28.6
2250 Female, age 67, right hemisphere 28.3
Perirhinal gyrus
nTPM: 34.5
1794 Male, age 80, right hemisphere 36.2
1841 Female, age 85, right hemisphere 34.8
1847 Female, age 91, left hemisphere 34.8
2848 Male, age 76, right hemisphere 34.2
2521 Female, age 94, right hemisphere 32.7
Subiculum
nTPM: 40.7
2438 Female, age 94, left hemisphere 45.2
1901 Male, age 80, both hemispheres 43.1
1977 Female, age 85, both hemispheres 42.5
2042 Male, age 76, both hemispheres 39.6
2619 Male, age 74, both hemispheres 38.5
2729 Female, age 91, right hemisphere 35.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.1
Samples: 197

Max nTPM: 130.1
Min nTPM: 5.2
Std nTPM: 20.4
Median nTPM: 40.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 130.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 122.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 102.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 101.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 101.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 98.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 95.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 90.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 86.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 82.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 79.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 77.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 76.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 75.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 75.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 75.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 73.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 72.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 71.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 71.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 69.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 68.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 68.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 68.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 67.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 67.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 67.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 67.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 66.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 64.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 63.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 63.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 63.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 62.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 60.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 59.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 59.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 59.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 58.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 58.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 57.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 57.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 56.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 56.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 56.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 56.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 55.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 54.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 54.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 53.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 53.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 52.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 52.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 51.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 51.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 51.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 51.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 51.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 50.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 50.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 50.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 49.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 48.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 48.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 48.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 48.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 47.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 47.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 47.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 47.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 46.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 46.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 45.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 45.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 45.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 44.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 44.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 44.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 44.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 44.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 44.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 43.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 43.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 43.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 43.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 43.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 41.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 41.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 41.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 41.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 41.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 40.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 40.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 40.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 40.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 40.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 40.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 40.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 40.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 39.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 39.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 38.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 38.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 38.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 38.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 38.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 38.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 37.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 37.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 37.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 37.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 37.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 37.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 37.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 36.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 36.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 36.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 36.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 36.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 36.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 35.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 35.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 34.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 34.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 34.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 34.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 34.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 33.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 33.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 33.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 33.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 33.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 33.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 32.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 32.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 32.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 32.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 32.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 31.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 31.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 30.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 30.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 30.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 29.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 29.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 29.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 29.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 29.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 29.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 29.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 28.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 28.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 28.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 28.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 27.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 27.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 27.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 26.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 26.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 26.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 26.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 25.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 25.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 25.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 25.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 24.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 24.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 24.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 24.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 24.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 23.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 23.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 22.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 22.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 22.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 22.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 22.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 21.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 21.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 21.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 21.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 21.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 21.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 21.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 20.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 18.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 18.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 18.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 18.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 17.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 17.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 16.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 14.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 11.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 5.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.2
FF:10153-102I9 76 years, female 55.7
FF:10169-103B7 60 years, female 40.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 49.6
Samples: 4

Max nTPM: 57.9
Min nTPM: 39.7
Sample A Female 57.9
Sample B Female 52.1
Sample C Male 48.7
Sample D Male 39.7
Entorhinal cortex
nTPM: 40.6
Samples: 4

Max nTPM: 48.9
Min nTPM: 35.1
Sample A Female 39.2
Sample B Female 39.0
Sample C Male 48.9
Sample D Male 35.1
Subiculum
nTPM: 46.3
Samples: 4

Max nTPM: 50.1
Min nTPM: 42.9
Sample A Female 50.1
Sample B Female 42.9
Sample C Male 48.8
Sample D Male 43.3
Ventral hippocampus
nTPM: 44.0
Samples: 4

Max nTPM: 53.4
Min nTPM: 34.6
Sample A Female 42.0
Sample B Female 34.6
Sample C Male 53.4
Sample D Male 45.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.7
Samples: 4

Max nTPM: 65.8
Min nTPM: 41.8
Sample A Male 43.6
Sample B Male 43.7
Sample C Female 41.8
Sample D Female 65.8
Hippocampal formation
nTPM: 36.1
Samples: 4

Max nTPM: 40.8
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 36.0
Sample C Female 40.8
Sample D Female 36.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.3
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 8.3
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 4.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.