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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:22.4 nTPM
HPA:22.4 nTPM
GTEx:11.6 nTPM
FANTOM5:71.9 Scaled Tags Per Million
Pig:31.2 nTPM
Mouse:26.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA016594
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.5
2302 Male, age 61, right hemisphere 26.1
2301 Female, age 72, unknown 20.6
2713 Male, age 75, left hemisphere 16.0
2306 Female, age 91, right hemisphere 14.1
2846 Female, age 79, unknown 14.1
1781 Male, age 74, unknown 12.9
2481 Female, age 94, left hemisphere 12.1
1854 Male, age 80, left hemisphere 12.0
1857 Female, age 85, left hemisphere 11.5
Claustrum
nTPM: 15.2
1956 Male, age 74, unknown 19.7
2392 Female, age 94, both hemispheres 19.6
2196 Female, age 79, unknown 16.7
2299 Female, age 85, both hemispheres 16.3
2198 Male, age 80, both hemispheres 15.5
2491 Male, age 75, both hemispheres 14.6
2568 Male, age 61, both hemispheres 13.7
2645 Female, age 72, unknown 10.8
2307 Female, age 91, both hemispheres 9.6
Globus pallidus, externus
nTPM: 21.4
2011 Female, age 91, left hemisphere 27.7
2114 Female, age 85, right hemisphere 25.1
2772 Female, age 79, unknown 25.0
1996 Male, age 80, right hemisphere 24.2
2395 Male, age 75, both hemispheres 24.0
2567 Female, age 72, unknown 16.1
2646 Male, age 61, right hemisphere 15.6
2644 Female, age 94, right hemisphere 13.7
Globus pallidus, internus
nTPM: 22.4
2714 Male, age 75, right hemisphere 32.8
2778 Female, age 91, both hemispheres 28.8
2111 Female, age 85, right hemisphere 28.7
1818 Male, age 74, unknown 22.7
2037 Male, age 80, right hemisphere 19.8
2566 Female, age 72, unknown 17.4
2483 Female, age 94, right hemisphere 16.8
1997 Male, age 61, left hemisphere 12.5
Nucleus accumbens
nTPM: 16.6
2305 Male, age 75, left hemisphere 32.9
2391 Female, age 94, left hemisphere 18.9
2698 Female, age 72, unknown 15.4
2732 Male, age 80, right hemisphere 14.4
2824 Male, age 61, right hemisphere 13.3
1806 Female, age 85, left hemisphere 13.0
1783 Male, age 74, unknown 12.5
1856 Female, age 91, right hemisphere 12.1
Nucleus basalis of Meynert
nTPM: 14.8
2842 Male, age 74, unknown 18.2
2200 Female, age 91, left hemisphere 15.3
2821 Male, age 75, both hemispheres 15.3
2300 Female, age 85, both hemispheres 15.1
2569 Male, age 61, both hemispheres 14.6
2393 Male, age 80, right hemisphere 12.9
2484 Female, age 94, left hemisphere 12.0
Nucleus of the diagonal band
nTPM: 13.3
1812 Female, age 91, both hemispheres 15.3
2029 Male, age 61, right hemisphere 14.2
2775 Male, age 80, right hemisphere 13.4
2195 Female, age 85, both hemispheres 12.1
1979 Male, age 74, unknown 11.2
Olfactory tubercle
nTPM: 13.2
1846 Male, age 80, right hemisphere 13.7
2487 Female, age 94, left hemisphere 13.7
1998 Female, age 91, both hemispheres 12.9
2856 Male, age 75, right hemisphere 12.4
Putamen
nTPM: 13.4
2490 Male, age 61, left hemisphere 20.4
1829 Male, age 74, unknown 15.1
1937 Female, age 91, right hemisphere 13.5
2466 Female, age 79, unknown 13.5
2482 Female, age 94, left hemisphere 12.7
2647 Male, age 75, left hemisphere 12.2
1838 Male, age 80, right hemisphere 11.2
2488 Female, age 85, left hemisphere 10.9
2489 Female, age 72, unknown 10.8
Septal nuclei
nTPM: 13.1
2394 Male, age 61, left hemisphere 15.4
2031 Female, age 72, unknown 13.9
2629 Female, age 94, right hemisphere 13.9
2009 Female, age 91, both hemispheres 13.0
2199 Male, age 80, right hemisphere 12.7
1960 Male, age 74, unknown 12.2
2059 Female, age 85, both hemispheres 10.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 22.8
Min nTPM: 4.8
Std nTPM: 2.8
Median nTPM: 10.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 22.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 20.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 18.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 18.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 18.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 17.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 17.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 16.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 41.3
Min nTPM: 4.8
Std nTPM: 3.7
Median nTPM: 9.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 41.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 27.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 27.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 26.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 26.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 19.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 15.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 15.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 15.4
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 14.2
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 14.1
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Brain - Putamen (basal ganglia)
Average nTPM: 11.6
Samples: 205

Max nTPM: 29.4
Min nTPM: 5.6
Std nTPM: 3.4
Median nTPM: 11.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 29.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 22.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 22.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 22.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 20.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 19.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 19.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 18.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 18.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 17.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 17.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.7
FF:10164-103B2 76 years, female 40.7
Nucleus accumbens
Scaled Tags Per Million: 71.9
FF:10037-101F1 23-56 years, mixed 71.9
Putamen
Scaled Tags Per Million: 54.4
FF:10176-103C5 60 years, female 54.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.2
Pig sample Sample description nTPM
Caudate
nTPM: 18.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 15.0
Sample A Female 18.2
Sample B Female 15.0
Sample C Male 18.6
Sample D Male 20.2
Putamen
nTPM: 31.3
Samples: 4

Max nTPM: 39.8
Min nTPM: 20.9
Sample A Female 39.8
Sample B Female 20.9
Sample C Male 31.2
Sample D Male 33.2
Septum
nTPM: 19.6
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.5
Sample A Female 20.9
Sample B Female 15.5
Sample C Male 20.3
Sample D Male 21.5
Ventral pallidum
nTPM: 25.9
Samples: 4

Max nTPM: 33.9
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 20.2
Sample C Male 31.3
Sample D Male 33.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 26.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 26.3
Samples: 4

Max nTPM: 27.8
Min nTPM: 24.9
Sample A Male 27.8
Sample B Male 26.5
Sample C Female 26.1
Sample D Female 24.9
Septum
nTPM: 18.6
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.4
Sample A Male 16.4
Sample B Male 16.5
Sample C Female 20.5
Sample D Female 21.0
Ventral forebrain
nTPM: 18.1
Samples: 4

Max nTPM: 19.0
Min nTPM: 17.3
Sample A Male 17.3
Sample B Male 18.3
Sample C Female 17.8
Sample D Female 19.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74357719 Antisense, RP_060119_03_C03, Mouse strain C57BL/6J (56 days, male) 0.0
70722922 Antisense, RP_050630_03_E11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74357719 Antisense, RP_060119_03_C03, Mouse strain C57BL/6J (56 days, male) 0.0
70722922 Antisense, RP_050630_03_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.