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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:16.8 nTPM
HPA Brain:149.5 nTPM
GTEx:16.8 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:17.1 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 149.5
Sample id Sample description nTPM
Amygdala
nTPM: 136.2
2695 Female, age 67, right hemisphere 190.6
2814 Male, age 76, right hemisphere 146.9
2514 Male, age 75, right hemisphere 127.6
2517 Female, age 94, left hemisphere 116.6
1987 Female, age 91, left hemisphere 99.5
Basal amygdala
nTPM: 125.1
2827 Female, age 67, right hemisphere 181.1
2609 Male, age 75, right hemisphere 129.3
2685 Female, age 94, left hemisphere 128.2
1955 Male, age 76, both hemispheres 112.5
2110 Male, age 80, left hemisphere 109.5
2243 Female, age 91, right hemisphere 90.2
Central amygdala
nTPM: 139.1
2826 Female, age 94, left hemisphere 200.8
2701 Female, age 91, right hemisphere 129.2
2515 Male, age 75, right hemisphere 123.3
2239 Male, age 80, left hemisphere 121.1
1905 Male, age 76, both hemispheres 120.9
Corticomedial amygdala
nTPM: 105.4
2535 Female, age 67, right hemisphere 135.0
2240 Male, age 76, both hemispheres 110.8
2429 Female, age 94, left hemisphere 107.4
2428 Male, age 75, right hemisphere 104.7
2829 Male, age 80, left hemisphere 89.7
2242 Female, age 91, right hemisphere 84.7
Lateral amygdala
nTPM: 149.5
2830 Female, age 67, right hemisphere 222.3
2516 Male, age 75, right hemisphere 168.8
2534 Female, age 94, left hemisphere 147.5
2256 Male, age 80, left hemisphere 136.6
2255 Female, age 91, right hemisphere 115.9
1883 Male, age 76, both hemispheres 105.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 16.8
Samples: 152

Max nTPM: 37.0
Min nTPM: 7.7
Std nTPM: 4.8
Median nTPM: 15.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 29.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 28.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 26.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 26.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 26.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 26.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 26.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 25.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 24.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 24.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 24.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 23.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 23.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 22.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 22.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 22.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 22.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 21.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 21.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 21.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 21.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 21.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 21.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 21.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 21.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 20.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 20.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 20.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 20.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 20.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 20.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 20.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 19.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 19.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 19.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 19.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 18.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 18.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 18.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 18.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 18.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 18.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 18.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 18.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 18.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 17.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 17.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 17.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 17.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 17.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 17.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 17.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 17.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 17.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 17.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 16.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 16.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 16.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 16.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 16.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 16.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 16.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 16.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 16.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 16.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 16.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 16.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 16.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 16.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 16.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 15.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 15.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 15.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 15.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 15.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 15.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 15.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 15.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 15.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 15.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 15.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 15.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 15.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 15.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 15.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 15.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 15.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 15.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 14.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 14.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 14.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 14.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 14.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 14.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 14.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 14.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 14.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 14.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 14.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 14.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 14.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 14.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 14.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 13.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 13.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 13.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 13.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 13.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 13.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 13.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 13.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 13.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 13.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 12.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 12.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 12.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 12.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 12.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 12.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 12.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 12.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 12.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 12.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 12.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 12.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 12.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 12.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 12.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 12.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 12.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 12.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 11.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 11.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 11.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 10.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 10.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 10.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 9.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 8.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 8.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 8.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 7.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 50.1
FF:10151-102I7 76 years, female 50.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 28.9
Pig sample Sample description nTPM
Amygdala
nTPM: 28.9
Samples: 4

Max nTPM: 32.6
Min nTPM: 27.3
Sample A Female 27.9
Sample B Female 32.6
Sample C Male 27.6
Sample D Male 27.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 17.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.1
Samples: 4

Max nTPM: 17.5
Min nTPM: 16.7
Sample A Male 17.5
Sample B Male 16.7
Sample C Female 17.2
Sample D Female 17.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
69288620 Antisense, RP_050407_01_D01, Mouse strain C57BL/6J (56 days, male) 1.1

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