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CYP51A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.5 nTPM
HPA:45.5 nTPM
GTEx:28.8 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:93.6 nTPM
Mouse:60.8 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.6
1870 Female, age 42, unknown 43.1
2411 Female, age 72, unknown 39.9
1830 Male, age 51, unknown 33.2
1833 Male, age 53, unknown 32.3
1827 Male, age 72, unknown 31.7
2828 Female, age 72, unknown 31.7
2019 Male, age 18, unknown 30.7
2219 Male, age 76, both hemispheres 24.1
2666 Male, age 74, left hemisphere 20.5
2586 Male, age 75, left hemisphere 19.3
Dorsal raphe nucleus
nTPM: 33.9
2750 Male, age 76, both hemispheres 45.7
2298 Female, age 72, unknown 40.0
2047 Male, age 72, unknown 37.6
2408 Male, age 75, both hemispheres 34.3
1828 Male, age 53, unknown 31.9
2593 Female, age 75, unknown 28.3
2304 Female, age 72, unknown 27.0
2016 Female, age 72, unknown 26.4
Inferior colliculus
nTPM: 30.5
1820 Female, age 72, unknown 35.9
2385 Female, age 72, unknown 33.7
1848 Female, age 42, unknown 32.7
2759 Female, age 72, unknown 32.4
2097 Female, age 72, unknown 31.9
1890 Male, age 53, unknown 26.4
1906 Male, age 76, both hemispheres 25.9
2849 Male, age 72, unknown 24.9
Median raphe nucleus
nTPM: 45.5
2317 Male, age 75, midline 60.4
2220 Male, age 76, midline 44.7
2225 Female, age 72, midline 42.1
2129 Male, age 18, midline 41.9
2501 Female, age 75, midline 38.5
Pedunculopontine tegmental nucleus
nTPM: 29.3
1921 Female, age 85, both hemispheres 38.6
1919 Male, age 76, both hemispheres 34.8
2705 Male, age 61, both hemispheres 23.7
2257 Male, age 80, both hemispheres 20.2
Periaquaductal grey, anterior
nTPM: 36.0
2502 Female, age 75, unknown 43.1
1947 Male, age 18, unknown 38.4
1795 Male, age 51, unknown 26.4
Periaquaductal grey, dorsal
nTPM: 27.4
1813 Female, age 42, unknown 35.0
2850 Male, age 76, both hemispheres 30.9
2464 Female, age 72, unknown 29.6
1874 Male, age 51, unknown 26.6
2500 Male, age 75, right hemisphere 25.1
1814 Female, age 72, unknown 24.2
1831 Male, age 72, unknown 24.1
1840 Male, age 53, unknown 23.7
Periaquaductal grey, lateral
nTPM: 40.9
2319 Male, age 74, both hemispheres 62.6
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 27.4
Pretectal area
nTPM: 31.3
2318 Male, age 74, both hemispheres 45.3
2667 Female, age 75, unknown 36.0
1817 Female, age 42, unknown 33.2
2224 Female, age 72, unknown 33.1
1815 Male, age 53, unknown 32.7
2825 Male, age 18, unknown 32.6
2007 Male, age 72, unknown 31.8
1816 Male, age 51, unknown 28.9
1944 Female, age 72, unknown 28.4
2754 Male, age 76, right hemisphere 27.3
2316 Male, age 76, right hemisphere 26.5
2407 Male, age 75, both hemispheres 20.0
Red nucleus
nTPM: 30.4
1821 Female, age 72, unknown 42.5
1865 Male, age 51, unknown 41.9
1954 Female, age 42, unknown 34.2
1904 Male, age 53, unknown 32.9
2785 Male, age 18, unknown 30.8
2725 Female, age 75, unknown 30.7
2227 Male, age 72, unknown 30.4
2769 Male, age 72, unknown 29.9
2503 Female, age 72, unknown 27.7
2823 Male, age 76, right hemisphere 24.8
2588 Male, age 74, left hemisphere 21.6
2584 Male, age 75, left hemisphere 16.9
Substantia nigra
nTPM: 23.4
1889 Female, age 72, unknown 32.1
1916 Female, age 42, unknown 31.8
1941 Male, age 53, unknown 30.0
2241 Male, age 72, unknown 29.8
1786 Male, age 76, right hemisphere 27.5
1851 Male, age 51, unknown 22.6
2590 Female, age 75, unknown 18.1
2699 Male, age 18, unknown 17.9
2409 Female, age 72, unknown 16.2
2583 Male, age 75, right hemisphere 15.7
2665 Male, age 74, both hemispheres 15.5
Superior colliculus
nTPM: 30.5
2587 Male, age 74, left hemisphere 36.1
2739 Male, age 18, unknown 34.6
2261 Male, age 18, unknown 33.6
1839 Male, age 51, unknown 32.5
1895 Male, age 76, right hemisphere 32.0
1913 Female, age 42, unknown 30.7
2668 Female, age 75, unknown 30.6
2087 Female, age 72, unknown 29.8
1796 Male, age 53, unknown 26.6
1995 Male, age 72, unknown 25.3
2664 Male, age 75, both hemispheres 23.4
Ventral tegmental area
nTPM: 31.5
2223 Female, age 72, unknown 43.2
2589 Male, age 74, both hemispheres 39.4
2592 Female, age 75, unknown 34.9
2410 Female, age 72, unknown 31.7
2218 Male, age 76, both hemispheres 30.8
1918 Male, age 72, unknown 29.8
1915 Female, age 42, unknown 29.0
2021 Male, age 53, unknown 28.5
1942 Male, age 51, unknown 26.3
2585 Male, age 75, both hemispheres 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.8
Samples: 139

Max nTPM: 61.2
Min nTPM: 11.4
Std nTPM: 10.4
Median nTPM: 27.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 61.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 61.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 58.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 54.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 53.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 51.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 50.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 47.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 46.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 46.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.8
FF:10158-103A5 76 years, female 63.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.6
Pig sample Sample description nTPM
Midbrain
nTPM: 93.6
Samples: 4

Max nTPM: 157.0
Min nTPM: 68.4
Sample A Female 157.0
Sample B Female 77.3
Sample C Male 71.5
Sample D Male 68.4
Periaqueductal gray
nTPM: 70.1
Samples: 3

Max nTPM: 78.1
Min nTPM: 64.4
Sample B Female 67.9
Sample C Male 78.1
Sample D Male 64.4
Substantia nigra
nTPM: 82.2
Samples: 4

Max nTPM: 108.9
Min nTPM: 63.1
Sample A Female 108.9
Sample B Female 63.1
Sample C Male 90.3
Sample D Male 66.4
Superior colliculi
nTPM: 71.9
Samples: 4

Max nTPM: 77.1
Min nTPM: 64.7
Sample A Female 77.1
Sample B Female 64.7
Sample C Male 72.5
Sample D Male 73.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 63.5
Min nTPM: 59.2
Sample A Male 60.0
Sample B Male 63.5
Sample C Female 59.2
Sample D Female 60.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
75934914 Antisense, RP_060530_01_E06, Mouse strain C57BL/6J (56 days, male) 7.5
68632208 Antisense, RP_050125_01_H08, Mouse strain C57BL/6J (56 days, male) 2.9
70919639 Antisense, RP_050713_01_G04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.