MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA:42.3 nTPM
GTEx:28.6 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:93.6 nTPM
Mouse:60.8 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.7
2411 Female, age 72, unknown 39.7
1870 Female, age 42, unknown 38.7
1830 Male, age 51, unknown 29.7
1833 Male, age 53, unknown 29.2
1827 Male, age 72, unknown 28.5
2828 Female, age 72, unknown 27.5
2019 Male, age 18, unknown 26.4
2219 Male, age 76, both hemispheres 21.7
2666 Male, age 74, left hemisphere 18.5
2586 Male, age 75, left hemisphere 17.2
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 43.3
2298 Female, age 72, unknown 39.8
2047 Male, age 72, unknown 34.3
1828 Male, age 53, unknown 28.9
2016 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 26.3
2097 Female, age 72, unknown 31.3
1848 Female, age 42, unknown 28.7
1890 Male, age 53, unknown 23.4
2849 Male, age 72, unknown 21.8
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Pedunculopontine tegmental nucleus
nTPM: 33.1
2334 Male, age 80, both hemispheres 37.9
1921 Female, age 85, both hemispheres 37.5
2338 Male, age 61, both hemispheres 23.7
Periaquaductal grey, anterior
nTPM: 31.4
2502 Female, age 75, unknown 37.4
1947 Male, age 18, unknown 33.7
1795 Male, age 51, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 24.8
2464 Female, age 72, unknown 28.9
2850 Male, age 76, both hemispheres 28.5
1831 Male, age 72, unknown 21.1
1840 Male, age 53, unknown 20.8
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 28.4
2272 Male, age 74, both hemispheres 26.7
2140 Male, age 76, both hemispheres 25.0
Pretectal area
nTPM: 27.6
2273 Male, age 74, both hemispheres 32.7
2224 Female, age 72, unknown 32.6
2667 Female, age 75, unknown 30.8
1815 Male, age 53, unknown 29.7
1817 Female, age 42, unknown 29.2
2007 Male, age 72, unknown 28.7
2825 Male, age 18, unknown 28.1
1816 Male, age 51, unknown 25.5
1944 Female, age 72, unknown 24.4
2316 Male, age 76, right hemisphere 24.1
2407 Male, age 75, both hemispheres 18.0
Red nucleus
nTPM: 27.1
1865 Male, age 51, unknown 38.0
1821 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 30.1
1904 Male, age 53, unknown 29.9
2227 Male, age 72, unknown 27.2
2503 Female, age 72, unknown 26.8
2769 Male, age 72, unknown 26.8
2785 Male, age 18, unknown 26.5
2725 Female, age 75, unknown 25.9
2823 Male, age 76, right hemisphere 22.4
2588 Male, age 74, left hemisphere 19.7
2584 Male, age 75, left hemisphere 14.8
Substantia nigra
nTPM: 19.9
1889 Female, age 72, unknown 27.9
1916 Female, age 42, unknown 27.9
1941 Male, age 53, unknown 27.0
2241 Male, age 72, unknown 26.7
1851 Male, age 51, unknown 19.4
2409 Female, age 72, unknown 14.8
2699 Male, age 18, unknown 14.4
2590 Female, age 75, unknown 14.3
2583 Male, age 75, right hemisphere 13.6
2665 Male, age 74, both hemispheres 13.4
Superior colliculus
nTPM: 26.7
2587 Male, age 74, left hemisphere 34.3
1895 Male, age 76, right hemisphere 29.6
2261 Male, age 18, unknown 29.1
1839 Male, age 51, unknown 28.9
1913 Female, age 42, unknown 26.8
2087 Female, age 72, unknown 25.8
2668 Female, age 75, unknown 25.8
1796 Male, age 53, unknown 23.6
1995 Male, age 72, unknown 22.2
2664 Male, age 75, both hemispheres 21.4
Ventral tegmental area
nTPM: 28.6
2223 Female, age 72, unknown 38.4
2410 Female, age 72, unknown 31.1
2218 Male, age 76, both hemispheres 28.4
2021 Male, age 53, unknown 25.6
1915 Female, age 42, unknown 25.2
1942 Male, age 51, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.6
Samples: 139

Max nTPM: 60.7
Min nTPM: 11.4
Std nTPM: 10.3
Median nTPM: 26.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 60.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 57.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 54.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 53.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 50.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 50.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 47.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 46.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 46.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.8
FF:10158-103A5 76 years, female 63.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.6
Pig sample Sample description nTPM
Midbrain
nTPM: 93.6
Samples: 4

Max nTPM: 157.0
Min nTPM: 68.4
Sample A Female 157.0
Sample B Female 77.3
Sample C Male 71.5
Sample D Male 68.4
Periaqueductal gray
nTPM: 70.1
Samples: 3

Max nTPM: 78.1
Min nTPM: 64.4
Sample B Female 67.9
Sample C Male 78.1
Sample D Male 64.4
Substantia nigra
nTPM: 82.2
Samples: 4

Max nTPM: 108.9
Min nTPM: 63.1
Sample A Female 108.9
Sample B Female 63.1
Sample C Male 90.3
Sample D Male 66.4
Superior colliculi
nTPM: 71.9
Samples: 4

Max nTPM: 77.1
Min nTPM: 64.7
Sample A Female 77.1
Sample B Female 64.7
Sample C Male 72.5
Sample D Male 73.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 63.5
Min nTPM: 59.2
Sample A Male 60.0
Sample B Male 63.5
Sample C Female 59.2
Sample D Female 60.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
75934914 Antisense, RP_060530_01_E06, Mouse strain C57BL/6J (56 days, male) 7.5
68632208 Antisense, RP_050125_01_H08, Mouse strain C57BL/6J (56 days, male) 2.9
70919639 Antisense, RP_050713_01_G04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.