MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:231.4 nTPM
HPA Brain:234.2 nTPM
GTEx:231.4 nTPM
FANTOM5:330.4 Scaled Tags Per Million
Pig:85.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 234.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.7
2828 Female, age 72, unknown 153.9
2586 Male, age 75, left hemisphere 126.2
1827 Male, age 72, unknown 122.5
1870 Female, age 42, unknown 112.1
2411 Female, age 72, unknown 97.6
2666 Male, age 74, left hemisphere 93.9
1833 Male, age 53, unknown 88.7
1830 Male, age 51, unknown 76.5
2219 Male, age 76, both hemispheres 61.1
2019 Male, age 18, unknown 55.0
Dorsal raphe nucleus
nTPM: 234.2
2298 Female, age 72, unknown 359.8
2016 Female, age 72, unknown 314.5
2047 Male, age 72, unknown 188.5
1828 Male, age 53, unknown 186.0
2750 Male, age 76, both hemispheres 122.1
Inferior colliculus
nTPM: 110.8
2849 Male, age 72, unknown 120.7
2097 Female, age 72, unknown 119.4
1890 Male, age 53, unknown 110.5
1848 Female, age 42, unknown 92.5
Median raphe nucleus
nTPM: 153.1
2220 Male, age 76, midline 153.1
Periaquaductal grey, anterior
nTPM: 124.8
1795 Male, age 51, unknown 184.6
2502 Female, age 75, unknown 110.8
1947 Male, age 18, unknown 79.1
Periaquaductal grey, dorsal
nTPM: 200.2
2850 Male, age 76, both hemispheres 273.0
1840 Male, age 53, unknown 205.4
1831 Male, age 72, unknown 183.4
2464 Female, age 72, unknown 139.1
Periaquaductal grey, lateral
nTPM: 215.3
2053 Male, age 18, unknown 245.1
2140 Male, age 76, both hemispheres 202.0
2272 Male, age 74, both hemispheres 198.9
Pretectal area
nTPM: 122.5
2273 Male, age 74, both hemispheres 199.9
2224 Female, age 72, unknown 185.3
2825 Male, age 18, unknown 160.4
2316 Male, age 76, right hemisphere 125.9
2407 Male, age 75, both hemispheres 125.8
1815 Male, age 53, unknown 112.2
2667 Female, age 75, unknown 106.4
1816 Male, age 51, unknown 93.2
1944 Female, age 72, unknown 90.3
1817 Female, age 42, unknown 78.3
2007 Male, age 72, unknown 70.4
Red nucleus
nTPM: 85.8
2725 Female, age 75, unknown 127.3
2823 Male, age 76, right hemisphere 95.5
2769 Male, age 72, unknown 94.5
2503 Female, age 72, unknown 94.1
2584 Male, age 75, left hemisphere 89.3
2227 Male, age 72, unknown 88.8
1821 Female, age 72, unknown 82.1
1904 Male, age 53, unknown 77.8
1865 Male, age 51, unknown 77.3
1954 Female, age 42, unknown 73.9
2785 Male, age 18, unknown 66.6
2588 Male, age 74, left hemisphere 62.3
Substantia nigra
nTPM: 152.4
2699 Male, age 18, unknown 298.1
1851 Male, age 51, unknown 166.4
2590 Female, age 75, unknown 161.7
2665 Male, age 74, both hemispheres 147.8
2583 Male, age 75, right hemisphere 146.3
1941 Male, age 53, unknown 144.3
2409 Female, age 72, unknown 134.2
1916 Female, age 42, unknown 125.3
2241 Male, age 72, unknown 105.2
1889 Female, age 72, unknown 94.8
Superior colliculus
nTPM: 128.2
1995 Male, age 72, unknown 202.3
1913 Female, age 42, unknown 188.0
2664 Male, age 75, both hemispheres 147.6
1796 Male, age 53, unknown 136.2
2587 Male, age 74, left hemisphere 128.0
2261 Male, age 18, unknown 120.1
2087 Female, age 72, unknown 118.6
1839 Male, age 51, unknown 94.5
2668 Female, age 75, unknown 83.8
1895 Male, age 76, right hemisphere 63.2
Ventral tegmental area
nTPM: 169.5
1942 Male, age 51, unknown 198.9
2021 Male, age 53, unknown 196.7
1915 Female, age 42, unknown 195.6
2223 Female, age 72, unknown 167.1
2218 Male, age 76, both hemispheres 143.6
2410 Female, age 72, unknown 114.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 231.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 231.4
Samples: 139

Max nTPM: 723.1
Min nTPM: 51.8
Std nTPM: 135.4
Median nTPM: 186.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 723.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 700.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 633.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 605.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 580.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 571.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 512.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 493.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 484.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 468.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 457.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 330.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 330.4
FF:10158-103A5 76 years, female 330.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.8
Samples: 4

Max nTPM: 95.0
Min nTPM: 62.8
Sample A Female 79.8
Sample B Female 95.0
Sample C Male 62.8
Sample D Male 81.6
Midbrain
nTPM: 70.2
Samples: 4

Max nTPM: 109.6
Min nTPM: 42.8
Sample A Female 109.6
Sample B Female 61.2
Sample C Male 67.0
Sample D Male 42.8
Periaqueductal gray
nTPM: 85.3
Samples: 3

Max nTPM: 92.6
Min nTPM: 71.8
Sample B Female 71.8
Sample C Male 91.6
Sample D Male 92.6
Superior colliculi
nTPM: 74.2
Samples: 4

Max nTPM: 77.4
Min nTPM: 69.7
Sample A Female 69.7
Sample B Female 77.4
Sample C Male 76.7
Sample D Male 73.0

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The Human Protein Atlas project is funded
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