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BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Midbrain
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:231.4 nTPM
HPA Brain:234.2 nTPM
GTEx:231.4 nTPM
FANTOM5:330.4 Scaled Tags Per Million
Pig:85.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 234.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.7
2828 Female, age 72, unknown 153.9
2586 Male, age 75, left hemisphere 126.2
1827 Male, age 72, unknown 122.5
1870 Female, age 42, unknown 112.1
2411 Female, age 72, unknown 97.6
2666 Male, age 74, left hemisphere 93.9
1833 Male, age 53, unknown 88.7
1830 Male, age 51, unknown 76.5
2219 Male, age 76, both hemispheres 61.1
2019 Male, age 18, unknown 55.0
Dorsal raphe nucleus
nTPM: 234.2
2298 Female, age 72, unknown 359.8
2016 Female, age 72, unknown 314.5
2047 Male, age 72, unknown 188.5
1828 Male, age 53, unknown 186.0
2750 Male, age 76, both hemispheres 122.1
Inferior colliculus
nTPM: 110.8
2849 Male, age 72, unknown 120.7
2097 Female, age 72, unknown 119.4
1890 Male, age 53, unknown 110.5
1848 Female, age 42, unknown 92.5
Median raphe nucleus
nTPM: 153.1
2220 Male, age 76, midline 153.1
Periaquaductal grey, anterior
nTPM: 124.8
1795 Male, age 51, unknown 184.6
2502 Female, age 75, unknown 110.8
1947 Male, age 18, unknown 79.1
Periaquaductal grey, dorsal
nTPM: 200.2
2850 Male, age 76, both hemispheres 273.0
1840 Male, age 53, unknown 205.4
1831 Male, age 72, unknown 183.4
2464 Female, age 72, unknown 139.1
Periaquaductal grey, lateral
nTPM: 215.3
2053 Male, age 18, unknown 245.1
2140 Male, age 76, both hemispheres 202.0
2272 Male, age 74, both hemispheres 198.9
Pretectal area
nTPM: 122.5
2273 Male, age 74, both hemispheres 199.9
2224 Female, age 72, unknown 185.3
2825 Male, age 18, unknown 160.4
2316 Male, age 76, right hemisphere 125.9
2407 Male, age 75, both hemispheres 125.8
1815 Male, age 53, unknown 112.2
2667 Female, age 75, unknown 106.4
1816 Male, age 51, unknown 93.2
1944 Female, age 72, unknown 90.3
1817 Female, age 42, unknown 78.3
2007 Male, age 72, unknown 70.4
Red nucleus
nTPM: 85.8
2725 Female, age 75, unknown 127.3
2823 Male, age 76, right hemisphere 95.5
2769 Male, age 72, unknown 94.5
2503 Female, age 72, unknown 94.1
2584 Male, age 75, left hemisphere 89.3
2227 Male, age 72, unknown 88.8
1821 Female, age 72, unknown 82.1
1904 Male, age 53, unknown 77.8
1865 Male, age 51, unknown 77.3
1954 Female, age 42, unknown 73.9
2785 Male, age 18, unknown 66.6
2588 Male, age 74, left hemisphere 62.3
Substantia nigra
nTPM: 152.4
2699 Male, age 18, unknown 298.1
1851 Male, age 51, unknown 166.4
2590 Female, age 75, unknown 161.7
2665 Male, age 74, both hemispheres 147.8
2583 Male, age 75, right hemisphere 146.3
1941 Male, age 53, unknown 144.3
2409 Female, age 72, unknown 134.2
1916 Female, age 42, unknown 125.3
2241 Male, age 72, unknown 105.2
1889 Female, age 72, unknown 94.8
Superior colliculus
nTPM: 128.2
1995 Male, age 72, unknown 202.3
1913 Female, age 42, unknown 188.0
2664 Male, age 75, both hemispheres 147.6
1796 Male, age 53, unknown 136.2
2587 Male, age 74, left hemisphere 128.0
2261 Male, age 18, unknown 120.1
2087 Female, age 72, unknown 118.6
1839 Male, age 51, unknown 94.5
2668 Female, age 75, unknown 83.8
1895 Male, age 76, right hemisphere 63.2
Ventral tegmental area
nTPM: 169.5
1942 Male, age 51, unknown 198.9
2021 Male, age 53, unknown 196.7
1915 Female, age 42, unknown 195.6
2223 Female, age 72, unknown 167.1
2218 Male, age 76, both hemispheres 143.6
2410 Female, age 72, unknown 114.8

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 231.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 231.4
Samples: 139

Max nTPM: 723.1
Min nTPM: 51.8
Std nTPM: 135.4
Median nTPM: 186.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 723.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 700.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 633.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 605.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 580.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 571.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 512.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 493.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 484.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 468.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 457.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 448.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 435.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 432.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 426.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 426.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 423.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 411.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 406.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 381.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 379.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 365.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 353.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 346.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 342.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 335.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 331.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 322.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 317.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 313.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 312.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 305.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 302.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 293.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 279.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 265.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 263.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 261.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 261.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 260.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 260.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 256.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 254.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 248.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 248.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 246.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 245.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 239.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 229.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 229.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 227.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 226.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 223.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 223.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 222.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 221.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 221.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 214.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 212.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 209.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 206.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 205.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 201.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 197.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 194.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 191.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 190.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 188.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 188.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 186.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 186.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 185.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 185.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 183.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 182.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 180.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 178.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 178.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 178.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 173.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 173.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 170.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 169.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 168.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 166.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 165.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 164.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 160.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 159.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 156.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 156.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 154.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 154.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 154.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 154.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 154.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 152.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 150.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 150.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 149.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 149.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 148.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 147.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 147.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 147.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 145.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 145.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 142.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 140.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 137.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 134.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 134.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 134.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 133.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 127.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 126.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 126.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 123.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 122.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 119.3
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 107.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 106.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 102.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 98.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 97.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 95.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 87.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 85.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 83.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 81.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 81.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 79.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 75.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 70.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 69.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 69.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 69.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 51.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 330.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 330.4
FF:10158-103A5 76 years, female 330.4

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 85.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.8
Samples: 4

Max nTPM: 95.0
Min nTPM: 62.8
Sample A Female 79.8
Sample B Female 95.0
Sample C Male 62.8
Sample D Male 81.6
Midbrain
nTPM: 70.2
Samples: 4

Max nTPM: 109.6
Min nTPM: 42.8
Sample A Female 109.6
Sample B Female 61.2
Sample C Male 67.0
Sample D Male 42.8
Periaqueductal gray
nTPM: 85.3
Samples: 3

Max nTPM: 92.6
Min nTPM: 71.8
Sample B Female 71.8
Sample C Male 91.6
Sample D Male 92.6
Superior colliculi
nTPM: 74.2
Samples: 4

Max nTPM: 77.4
Min nTPM: 69.7
Sample A Female 69.7
Sample B Female 77.4
Sample C Male 76.7
Sample D Male 73.0

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