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M6PR
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:88.3 nTPM
HPA:88.3 nTPM
GTEx:30.0 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:100.1 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040445Antibody CAB034464
Glial cells HighMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 86.7
2481 Female, age 94, left hemisphere 90.1
2306 Female, age 91, right hemisphere 89.5
2301 Female, age 72, unknown 89.3
2846 Female, age 79, unknown 88.8
2713 Male, age 75, left hemisphere 87.6
1854 Male, age 80, left hemisphere 85.6
1781 Male, age 74, unknown 84.2
2302 Male, age 61, right hemisphere 82.5
1857 Female, age 85, left hemisphere 82.2
Claustrum
nTPM: 84.9
2307 Female, age 91, both hemispheres 88.0
2198 Male, age 80, both hemispheres 87.9
2299 Female, age 85, both hemispheres 85.9
2392 Female, age 94, both hemispheres 85.6
1956 Male, age 74, unknown 85.2
2196 Female, age 79, unknown 85.2
2645 Female, age 72, unknown 82.6
2491 Male, age 75, both hemispheres 82.3
2568 Male, age 61, both hemispheres 81.3
Globus pallidus, externus
nTPM: 88.3
2395 Male, age 75, both hemispheres 99.5
2644 Female, age 94, right hemisphere 91.4
2011 Female, age 91, left hemisphere 90.7
1996 Male, age 80, right hemisphere 87.8
2772 Female, age 79, unknown 87.7
2114 Female, age 85, right hemisphere 85.6
2646 Male, age 61, right hemisphere 82.8
2567 Female, age 72, unknown 81.0
Globus pallidus, internus
nTPM: 87.8
2483 Female, age 94, right hemisphere 94.9
2037 Male, age 80, right hemisphere 90.3
2714 Male, age 75, right hemisphere 88.7
1818 Male, age 74, unknown 86.7
2111 Female, age 85, right hemisphere 86.3
2778 Female, age 91, both hemispheres 85.3
2566 Female, age 72, unknown 85.2
1997 Male, age 61, left hemisphere 85.0
Nucleus accumbens
nTPM: 88.2
2305 Male, age 75, left hemisphere 98.9
2391 Female, age 94, left hemisphere 89.3
2698 Female, age 72, unknown 88.5
1783 Male, age 74, unknown 86.4
1806 Female, age 85, left hemisphere 86.3
2732 Male, age 80, right hemisphere 85.8
1856 Female, age 91, right hemisphere 85.1
2824 Male, age 61, right hemisphere 85.1
Nucleus basalis of Meynert
nTPM: 84.5
2842 Male, age 74, unknown 90.5
2484 Female, age 94, left hemisphere 84.2
2393 Male, age 80, right hemisphere 84.0
2200 Female, age 91, left hemisphere 83.8
2569 Male, age 61, both hemispheres 83.2
2821 Male, age 75, both hemispheres 83.1
2300 Female, age 85, both hemispheres 82.7
Nucleus of the diagonal band
nTPM: 86.9
1812 Female, age 91, both hemispheres 90.3
2775 Male, age 80, right hemisphere 87.7
2195 Female, age 85, both hemispheres 87.2
1979 Male, age 74, unknown 85.8
2029 Male, age 61, right hemisphere 83.3
Olfactory tubercle
nTPM: 84.9
1846 Male, age 80, right hemisphere 87.6
1998 Female, age 91, both hemispheres 87.1
2487 Female, age 94, left hemisphere 82.5
2856 Male, age 75, right hemisphere 82.3
Putamen
nTPM: 85.3
2482 Female, age 94, left hemisphere 92.6
1937 Female, age 91, right hemisphere 87.4
2466 Female, age 79, unknown 87.4
1838 Male, age 80, right hemisphere 85.9
2490 Male, age 61, left hemisphere 85.4
2488 Female, age 85, left hemisphere 85.1
1829 Male, age 74, unknown 84.7
2489 Female, age 72, unknown 80.3
2647 Male, age 75, left hemisphere 79.3
Septal nuclei
nTPM: 86.8
2031 Female, age 72, unknown 90.9
1960 Male, age 74, unknown 89.8
2009 Female, age 91, both hemispheres 89.4
2629 Female, age 94, right hemisphere 86.2
2059 Female, age 85, both hemispheres 85.6
2394 Male, age 61, left hemisphere 83.7
2199 Male, age 80, right hemisphere 82.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.5
Samples: 246

Max nTPM: 58.3
Min nTPM: 15.9
Std nTPM: 6.0
Median nTPM: 27.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 58.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 51.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 48.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 48.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 46.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 41.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 40.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 40.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 39.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 39.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.0
Samples: 246

Max nTPM: 59.4
Min nTPM: 9.0
Std nTPM: 8.4
Median nTPM: 29.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 59.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 57.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 53.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 52.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 51.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 48.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 47.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 47.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 46.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 46.4
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Brain - Putamen (basal ganglia)
Average nTPM: 27.9
Samples: 205

Max nTPM: 50.8
Min nTPM: 10.7
Std nTPM: 6.7
Median nTPM: 26.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 50.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 48.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 46.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 46.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 44.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 44.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 43.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 41.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 41.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 40.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 40.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.1
FF:10164-103B2 76 years, female 55.1
Nucleus accumbens
Scaled Tags Per Million: 49.6
FF:10037-101F1 23-56 years, mixed 49.6
Putamen
Scaled Tags Per Million: 53.3
FF:10176-103C5 60 years, female 53.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Caudate
nTPM: 26.1
Samples: 4

Max nTPM: 31.8
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 24.5
Sample C Male 31.8
Sample D Male 24.4
Putamen
nTPM: 29.6
Samples: 4

Max nTPM: 36.1
Min nTPM: 22.4
Sample A Female 28.9
Sample B Female 22.4
Sample C Male 36.1
Sample D Male 31.0
Septum
nTPM: 28.6
Samples: 4

Max nTPM: 32.6
Min nTPM: 24.1
Sample A Female 29.4
Sample B Female 24.1
Sample C Male 32.6
Sample D Male 28.1
Ventral pallidum
nTPM: 27.3
Samples: 4

Max nTPM: 29.8
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 26.7
Sample C Male 29.8
Sample D Male 26.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 88.7
Samples: 4

Max nTPM: 92.5
Min nTPM: 85.7
Sample A Male 92.5
Sample B Male 88.9
Sample C Female 87.7
Sample D Female 85.7
Septum
nTPM: 100.1
Samples: 4

Max nTPM: 104.1
Min nTPM: 93.8
Sample A Male 93.8
Sample B Male 104.1
Sample C Female 102.2
Sample D Female 100.4
Ventral forebrain
nTPM: 80.7
Samples: 4

Max nTPM: 88.0
Min nTPM: 75.3
Sample A Male 75.4
Sample B Male 84.1
Sample C Female 88.0
Sample D Female 75.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
69134268 Antisense, RP_050321_02_F06, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.7
69134268 Antisense, RP_050321_02_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.