BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:83.3 nTPM
HPA:83.3 nTPM
GTEx:29.8 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:100.1 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040445Antibody CAB034464
Glial cells HighMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 83.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 80.5
2481 Female, age 94, left hemisphere 85.4
2846 Female, age 79, unknown 83.6
2288 Male, age 75, left hemisphere 82.8
1854 Male, age 80, left hemisphere 80.6
1781 Male, age 74, unknown 79.4
2290 Female, age 72, unknown 78.3
1857 Female, age 85, left hemisphere 77.4
2289 Male, age 61, right hemisphere 76.2
Claustrum
nTPM: 79.3
2198 Male, age 80, both hemispheres 82.8
2392 Female, age 94, both hemispheres 80.9
1956 Male, age 74, unknown 80.4
2196 Female, age 79, unknown 80.1
2292 Female, age 85, both hemispheres 79.6
2491 Male, age 75, both hemispheres 78.1
2645 Female, age 72, unknown 77.9
2284 Female, age 91, both hemispheres 77.2
2568 Male, age 61, both hemispheres 76.4
Globus pallidus, externus
nTPM: 83.0
2395 Male, age 75, both hemispheres 95.4
1996 Male, age 80, right hemisphere 82.7
2772 Female, age 79, unknown 82.5
2646 Male, age 61, right hemisphere 77.8
2567 Female, age 72, unknown 76.4
Globus pallidus, internus
nTPM: 83.3
2483 Female, age 94, right hemisphere 90.1
2037 Male, age 80, right hemisphere 85.2
2287 Male, age 75, right hemisphere 83.5
1818 Male, age 74, unknown 81.9
2111 Female, age 85, right hemisphere 81.6
2566 Female, age 72, unknown 80.6
2778 Female, age 91, both hemispheres 80.2
Nucleus accumbens
nTPM: 82.1
2391 Female, age 94, left hemisphere 84.6
2286 Male, age 75, left hemisphere 84.2
2698 Female, age 72, unknown 83.9
1783 Male, age 74, unknown 81.5
1806 Female, age 85, left hemisphere 81.5
2732 Male, age 80, right hemisphere 80.8
2824 Male, age 61, right hemisphere 80.1
1856 Female, age 91, right hemisphere 79.9
Nucleus basalis of Meynert
nTPM: 78.9
2484 Female, age 94, left hemisphere 79.5
2393 Male, age 80, right hemisphere 79.0
2821 Male, age 75, both hemispheres 79.0
2569 Male, age 61, both hemispheres 78.2
Nucleus of the diagonal band
nTPM: 81.9
1812 Female, age 91, both hemispheres 85.0
2775 Male, age 80, right hemisphere 82.7
2195 Female, age 85, both hemispheres 82.4
1979 Male, age 74, unknown 81.1
2029 Male, age 61, right hemisphere 78.3
Olfactory tubercle
nTPM: 80.1
1846 Male, age 80, right hemisphere 82.5
1998 Female, age 91, both hemispheres 81.9
2856 Male, age 75, right hemisphere 78.2
2487 Female, age 94, left hemisphere 77.8
Putamen
nTPM: 80.5
2482 Female, age 94, left hemisphere 87.8
1937 Female, age 91, right hemisphere 82.2
2466 Female, age 79, unknown 82.2
1838 Male, age 80, right hemisphere 80.9
1829 Male, age 74, unknown 79.9
2489 Female, age 72, unknown 75.7
2647 Male, age 75, left hemisphere 75.1
Septal nuclei
nTPM: 82.0
2031 Female, age 72, unknown 86.3
1960 Male, age 74, unknown 85.0
2009 Female, age 91, both hemispheres 84.2
2629 Female, age 94, right hemisphere 81.6
2059 Female, age 85, both hemispheres 80.9
2394 Male, age 61, left hemisphere 78.7
2199 Male, age 80, right hemisphere 77.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.2
Samples: 246

Max nTPM: 57.9
Min nTPM: 15.8
Std nTPM: 5.9
Median nTPM: 27.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 57.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 51.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 48.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 47.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 46.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 41.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 40.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 40.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 39.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 39.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 58.9
Min nTPM: 8.9
Std nTPM: 8.3
Median nTPM: 28.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 58.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 57.5
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 52.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 52.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 51.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 47.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 47.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 46.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 46.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 46.1
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Brain - Putamen (basal ganglia)
Average nTPM: 27.7
Samples: 205

Max nTPM: 50.4
Min nTPM: 10.7
Std nTPM: 6.7
Median nTPM: 26.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 50.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 48.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 45.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 45.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 44.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 43.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 43.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 41.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 40.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 40.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 40.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.1
FF:10164-103B2 76 years, female 55.1
Globus pallidus
Scaled Tags Per Million: 48.3
FF:10161-103A8 76 years, female 50.0
FF:10175-103C4 60 years, female 46.5
Nucleus accumbens
Scaled Tags Per Million: 49.6
FF:10037-101F1 23-56 years, mixed 49.6
Putamen
Scaled Tags Per Million: 53.3
FF:10176-103C5 60 years, female 53.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Caudate
nTPM: 26.1
Samples: 4

Max nTPM: 31.8
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 24.5
Sample C Male 31.8
Sample D Male 24.4
Putamen
nTPM: 29.6
Samples: 4

Max nTPM: 36.1
Min nTPM: 22.4
Sample A Female 28.9
Sample B Female 22.4
Sample C Male 36.1
Sample D Male 31.0
Septum
nTPM: 28.6
Samples: 4

Max nTPM: 32.6
Min nTPM: 24.1
Sample A Female 29.4
Sample B Female 24.1
Sample C Male 32.6
Sample D Male 28.1
Ventral pallidum
nTPM: 27.3
Samples: 4

Max nTPM: 29.8
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 26.7
Sample C Male 29.8
Sample D Male 26.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 88.7
Samples: 4

Max nTPM: 92.5
Min nTPM: 85.7
Sample A Male 92.5
Sample B Male 88.9
Sample C Female 87.7
Sample D Female 85.7
Septum
nTPM: 100.1
Samples: 4

Max nTPM: 104.1
Min nTPM: 93.8
Sample A Male 93.8
Sample B Male 104.1
Sample C Female 102.2
Sample D Female 100.4
Ventral forebrain
nTPM: 80.7
Samples: 4

Max nTPM: 88.0
Min nTPM: 75.3
Sample A Male 75.4
Sample B Male 84.1
Sample C Female 88.0
Sample D Female 75.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
69134268 Antisense, RP_050321_02_F06, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.7
69134268 Antisense, RP_050321_02_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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