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DBNDD1
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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.4 nTPM
HPA Brain:85.9 nTPM
GTEx:54.4 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:20.1 nTPM
Mouse:19.5 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 85.9
Sample id Sample description nTPM
Amygdala
nTPM: 81.2
2814 Male, age 76, right hemisphere 213.0
2695 Female, age 67, right hemisphere 69.8
2517 Female, age 94, left hemisphere 47.1
2514 Male, age 75, right hemisphere 42.0
1987 Female, age 91, left hemisphere 34.1
Basal amygdala
nTPM: 76.3
1955 Male, age 76, both hemispheres 137.2
2827 Female, age 67, right hemisphere 78.7
2609 Male, age 75, right hemisphere 72.7
2685 Female, age 94, left hemisphere 59.2
2110 Male, age 80, left hemisphere 58.6
2243 Female, age 91, right hemisphere 51.5
Central amygdala
nTPM: 85.9
1905 Male, age 76, both hemispheres 201.6
2826 Female, age 94, left hemisphere 88.2
2239 Male, age 80, left hemisphere 61.7
2515 Male, age 75, right hemisphere 41.7
2701 Female, age 91, right hemisphere 36.2
Corticomedial amygdala
nTPM: 61.5
2240 Male, age 76, both hemispheres 111.3
2535 Female, age 67, right hemisphere 61.0
2428 Male, age 75, right hemisphere 58.5
2429 Female, age 94, left hemisphere 53.1
2829 Male, age 80, left hemisphere 48.9
2242 Female, age 91, right hemisphere 36.3
Lateral amygdala
nTPM: 81.5
1883 Male, age 76, both hemispheres 145.7
2534 Female, age 94, left hemisphere 98.9
2830 Female, age 67, right hemisphere 71.5
2256 Male, age 80, left hemisphere 68.5
2516 Male, age 75, right hemisphere 58.7
2255 Female, age 91, right hemisphere 45.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 54.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 54.4
Samples: 152

Max nTPM: 146.9
Min nTPM: 2.9
Std nTPM: 26.2
Median nTPM: 49.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 146.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 129.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 116.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 111.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 110.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 107.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 106.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 106.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 103.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 102.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 102.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 98.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 97.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 95.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 87.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 87.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 84.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 83.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 81.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 81.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 75.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 73.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 73.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 71.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 71.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 71.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 69.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 69.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 68.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 68.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 67.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 66.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 66.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 65.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 64.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 64.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 63.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 63.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 63.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 62.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 62.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 60.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 60.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 59.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 58.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 58.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 56.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 56.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 56.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 55.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 55.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 54.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 52.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 52.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 52.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 52.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 51.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 51.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 50.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 50.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 49.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 49.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 49.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 48.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 48.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 48.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 47.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 46.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 45.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 44.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 44.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 43.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 43.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 43.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 42.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 42.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 41.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 40.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 40.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 40.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 39.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 39.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 38.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 38.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 38.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 37.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 36.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 36.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 36.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 36.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 35.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 35.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 35.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 35.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 35.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 34.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 33.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 32.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 32.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 32.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 32.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 31.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 30.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 30.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 30.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 29.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 29.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 29.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 28.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 27.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 27.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 26.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 26.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 25.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 23.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 22.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 22.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 22.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 21.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 20.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 20.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 20.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 18.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 15.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 12.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.6
FF:10151-102I7 76 years, female 19.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 20.1
Pig sample Sample description nTPM
Amygdala
nTPM: 20.1
Samples: 4

Max nTPM: 25.3
Min nTPM: 16.0
Sample A Female 25.3
Sample B Female 16.0
Sample C Male 22.5
Sample D Male 16.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 19.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 19.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.3
Sample A Male 20.5
Sample B Male 20.3
Sample C Female 20.0
Sample D Female 17.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
68745251 Antisense, RP_050210_01_E10, Mouse strain C57BL/6J (56 days, male) 0.1

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