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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:39.4 nTPM
HPA:39.4 nTPM
GTEx:21.0 nTPM
FANTOM5:80.1 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:7.5 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA019044Antibody CAB022157Antibody CAB025216
Glial cells Not detectedMediumMedium
Neuronal cells MediumHighMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Hippocampus
nTPM: 39.4
1855 Male, age 76, left hemisphere 47.9
2148 Female, age 91, left hemisphere 42.0
1898 Male, age 80, left hemisphere 40.4
2621 Female, age 67, right hemisphere 37.4
2529 Female, age 94, left hemisphere 36.1
1911 Female, age 85, right hemisphere 32.6
Dentate gyrus
nTPM: 39.3
2531 Female, age 67, both hemispheres 46.7
2010 Male, age 76, both hemispheres 44.9
2530 Female, age 94, left hemisphere 38.4
2246 Female, age 85, both hemispheres 37.9
1927 Female, age 91, both hemispheres 35.3
2528 Male, age 74, both hemispheres 32.5
Entorhinal gyrus
nTPM: 28.9
2686 Male, age 75, right hemisphere 36.8
2117 Female, age 91, right hemisphere 31.3
2764 Male, age 80, right hemisphere 28.9
1787 Male, age 76, left hemisphere 27.5
2613 Female, age 94, left hemisphere 25.0
1938 Female, age 85, left hemisphere 23.8
Hippocampus, CA1
nTPM: 36.6
1873 Female, age 85, both hemispheres 43.9
2082 Female, age 91, right hemisphere 40.4
2045 Male, age 76, both hemispheres 39.3
2527 Male, age 74, both hemispheres 29.7
2749 Male, age 80, left hemisphere 29.6
Hippocampus, CA2
nTPM: 34.9
1963 Male, age 80, left hemisphere 43.5
2113 Female, age 91, right hemisphere 37.3
2437 Female, age 94, left hemisphere 36.8
1892 Male, age 76, both hemispheres 33.3
1940 Female, age 85, left hemisphere 30.6
2249 Male, age 74, both hemispheres 28.0
Hippocampus, CA3
nTPM: 38.8
2861 Female, age 67, both hemispheres 53.8
2436 Male, age 74, both hemispheres 39.4
1867 Male, age 76, both hemispheres 38.1
1891 Female, age 85, both hemispheres 36.0
2137 Male, age 80, left hemisphere 33.5
2620 Female, age 94, left hemisphere 32.2
Parahippocampal cortex
nTPM: 29.5
2018 Male, age 76, both hemispheres 38.3
2622 Female, age 67, right hemisphere 34.4
2693 Female, age 94, both hemispheres 31.2
2692 Male, age 74, both hemispheres 31.1
1933 Female, age 85, both hemispheres 28.4
1850 Male, age 80, both hemispheres 28.0
2532 Female, age 72, left hemisphere 27.5
2250 Female, age 67, right hemisphere 26.7
1990 Female, age 91, right hemisphere 25.6
2245 Female, age 91, both hemispheres 24.1
Perirhinal gyrus
nTPM: 25.1
2848 Male, age 76, right hemisphere 29.3
2521 Female, age 94, right hemisphere 28.1
1841 Female, age 85, right hemisphere 23.8
1794 Male, age 80, right hemisphere 22.2
1847 Female, age 91, left hemisphere 22.2
Subiculum
nTPM: 34.0
2042 Male, age 76, both hemispheres 43.3
2729 Female, age 91, right hemisphere 40.6
1901 Male, age 80, both hemispheres 31.0
2438 Female, age 94, left hemisphere 30.8
2619 Male, age 74, both hemispheres 30.1
1977 Female, age 85, both hemispheres 27.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.0
Samples: 197

Max nTPM: 111.6
Min nTPM: 5.4
Std nTPM: 10.7
Median nTPM: 18.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 111.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 66.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 51.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 48.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 44.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 42.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 41.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 41.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 40.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 38.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 37.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 36.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 35.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 35.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 33.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 33.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 32.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 32.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 32.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 32.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 32.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 31.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 31.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 30.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 30.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 30.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 29.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 29.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 29.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 29.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 29.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 28.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 28.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 26.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 26.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 25.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 25.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 24.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 24.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 24.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 24.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 24.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 24.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 24.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 24.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 24.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 24.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 23.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 23.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 23.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 23.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 23.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 23.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 23.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 23.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 23.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 22.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 22.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 22.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 22.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 22.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 22.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 22.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 22.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 22.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 21.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 21.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 21.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 21.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 21.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 21.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 21.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 20.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 20.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 20.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 20.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 20.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 20.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 20.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 20.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 20.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 20.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 20.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 20.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 19.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 19.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 19.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 19.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 19.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 19.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 19.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 19.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 19.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 19.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 19.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 18.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 18.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 18.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 18.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 18.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 18.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 18.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 18.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 18.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 18.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 17.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 17.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 17.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 17.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 17.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 17.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 17.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 17.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 17.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 17.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 17.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 17.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 17.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 17.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 17.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 17.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 17.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 17.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 17.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 16.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 16.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 16.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 16.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 16.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 16.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 16.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 16.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 15.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 15.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 15.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 15.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 15.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 15.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 15.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 15.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 15.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 15.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 15.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 15.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 15.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 15.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 15.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 14.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 14.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 14.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 14.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 14.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 14.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 14.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 14.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 14.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 14.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 14.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 14.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 14.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 13.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 13.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 13.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 13.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 13.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 13.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 13.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 13.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 13.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 12.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 12.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 12.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 12.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 12.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 12.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 12.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 11.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 11.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 11.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 11.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 11.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 10.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 10.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 10.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 10.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 10.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 10.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 10.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 10.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 10.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 9.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 8.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 8.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 7.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 7.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 5.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 80.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 80.1
FF:10169-103B7 60 years, female 95.2
FF:10153-102I9 76 years, female 65.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 13.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.4
Samples: 4

Max nTPM: 13.8
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 13.2
Sample C Male 13.2
Sample D Male 13.8
Entorhinal cortex
nTPM: 12.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 12.0
Sample A Female 13.0
Sample B Female 12.7
Sample C Male 12.0
Sample D Male 12.5
Subiculum
nTPM: 13.0
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 13.9
Sample C Male 11.8
Sample D Male 14.5
Ventral hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.6
Sample A Female 14.6
Sample B Female 15.1
Sample C Male 12.6
Sample D Male 13.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 7.0
Sample A Male 7.5
Sample B Male 7.0
Sample C Female 7.4
Sample D Female 7.7
Hippocampal formation
nTPM: 7.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 7.0
Sample A Male 7.0
Sample B Male 7.4
Sample C Female 8.1
Sample D Female 7.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
68545348 Antisense, RP_050118_03_C07, Mouse strain C57BL/6J (56 days, male) 1.0
71212494 Antisense, RP_050816_03_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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