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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:47.8 nTPM
FANTOM5:128.6 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:38.9 nTPM
Allen mouse:12.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA017335Antibody HPA018011
Glial cells MediumHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Hippocampus
nTPM: 39.3
1911 Female, age 85, right hemisphere 41.9
2529 Female, age 94, left hemisphere 41.7
2621 Female, age 67, right hemisphere 41.5
2148 Female, age 91, left hemisphere 40.0
1898 Male, age 80, left hemisphere 36.2
1855 Male, age 76, left hemisphere 34.6
Dentate gyrus
nTPM: 39.8
2246 Female, age 85, both hemispheres 42.2
2531 Female, age 67, both hemispheres 41.9
2528 Male, age 74, both hemispheres 40.6
2010 Male, age 76, both hemispheres 40.4
1927 Female, age 91, both hemispheres 38.4
2530 Female, age 94, left hemisphere 35.4
Entorhinal gyrus
nTPM: 40.7
1787 Male, age 76, left hemisphere 42.2
2764 Male, age 80, right hemisphere 41.1
2117 Female, age 91, right hemisphere 40.6
2613 Female, age 94, left hemisphere 40.5
2686 Male, age 75, right hemisphere 40.0
1938 Female, age 85, left hemisphere 39.6
Hippocampus, CA1
nTPM: 39.1
2045 Male, age 76, both hemispheres 40.7
2527 Male, age 74, both hemispheres 40.6
2082 Female, age 91, right hemisphere 39.2
1873 Female, age 85, both hemispheres 37.7
2749 Male, age 80, left hemisphere 37.3
Hippocampus, CA2
nTPM: 38.9
1940 Female, age 85, left hemisphere 39.9
1892 Male, age 76, both hemispheres 39.4
1963 Male, age 80, left hemisphere 38.9
2113 Female, age 91, right hemisphere 38.8
2437 Female, age 94, left hemisphere 38.8
2249 Male, age 74, both hemispheres 37.6
Hippocampus, CA3
nTPM: 39.4
1891 Female, age 85, both hemispheres 43.0
2137 Male, age 80, left hemisphere 40.5
1867 Male, age 76, both hemispheres 39.2
2861 Female, age 67, both hemispheres 38.5
2436 Male, age 74, both hemispheres 38.4
2620 Female, age 94, left hemisphere 36.9
Parahippocampal cortex
nTPM: 41.1
2018 Male, age 76, both hemispheres 44.6
2693 Female, age 94, both hemispheres 44.4
2692 Male, age 74, both hemispheres 43.3
2532 Female, age 72, left hemisphere 41.5
1850 Male, age 80, both hemispheres 41.0
1990 Female, age 91, right hemisphere 40.2
1933 Female, age 85, both hemispheres 40.1
2245 Female, age 91, both hemispheres 40.1
2622 Female, age 67, right hemisphere 39.1
2250 Female, age 67, right hemisphere 36.9
Perirhinal gyrus
nTPM: 39.5
1794 Male, age 80, right hemisphere 41.3
1841 Female, age 85, right hemisphere 41.1
2521 Female, age 94, right hemisphere 40.2
2848 Male, age 76, right hemisphere 39.3
1847 Female, age 91, left hemisphere 35.6
Subiculum
nTPM: 39.8
2042 Male, age 76, both hemispheres 43.7
1901 Male, age 80, both hemispheres 41.5
1977 Female, age 85, both hemispheres 40.8
2619 Male, age 74, both hemispheres 38.3
2729 Female, age 91, right hemisphere 37.5
2438 Female, age 94, left hemisphere 37.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.8
Samples: 197

Max nTPM: 93.1
Min nTPM: 13.7
Std nTPM: 10.4
Median nTPM: 47.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 93.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 81.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 79.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 77.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 69.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 68.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 68.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 67.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 67.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 66.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 66.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 65.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 64.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 63.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 63.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 63.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 61.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 60.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 59.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 59.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 59.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 59.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 59.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 59.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 59.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 59.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 58.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 57.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 56.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 56.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 56.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 56.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 55.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 55.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 55.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 55.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 55.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 55.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 55.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 54.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 54.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 54.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 54.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 54.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 54.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 53.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 53.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 53.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 53.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 53.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 53.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 53.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 53.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 52.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 52.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 52.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 51.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 51.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 51.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 51.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 51.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 51.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 51.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 51.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 51.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 50.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 50.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 50.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 50.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 50.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 50.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 50.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 50.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 49.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 49.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 49.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 49.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 49.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 49.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 48.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 48.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 48.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 48.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 48.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 48.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 48.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 48.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 48.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 48.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 47.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 47.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 47.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 47.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 47.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 47.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 47.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 47.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 47.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 47.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 47.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 47.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 46.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 46.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 46.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 46.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 46.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 46.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 46.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 45.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 45.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 45.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 45.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 45.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 45.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 45.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 45.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 45.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 45.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 45.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 45.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 45.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 44.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 44.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 44.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 44.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 44.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 44.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 44.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 43.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 43.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 43.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 43.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 43.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 43.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 43.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 43.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 42.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 42.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 42.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 42.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 42.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 42.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 41.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 41.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 41.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 41.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 41.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 41.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 40.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 40.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 40.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 40.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 40.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 40.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 40.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 39.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 39.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 39.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 39.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 39.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 39.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 39.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 39.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 38.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 38.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 38.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 38.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 38.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 38.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 37.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 37.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 36.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 36.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 36.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 36.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 36.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 35.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 35.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 35.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 35.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 34.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 34.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 34.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 33.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 33.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 33.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 33.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 32.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 32.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 31.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 31.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 30.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 30.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 27.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 18.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 13.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 128.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 128.6
FF:10169-103B7 60 years, female 139.1
FF:10153-102I9 76 years, female 118.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 42.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.8
Samples: 4

Max nTPM: 46.6
Min nTPM: 39.8
Sample A Female 39.8
Sample B Female 39.8
Sample C Male 45.0
Sample D Male 46.6
Entorhinal cortex
nTPM: 38.0
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.3
Sample A Female 41.0
Sample B Female 36.3
Sample C Male 35.3
Sample D Male 39.2
Subiculum
nTPM: 42.3
Samples: 4

Max nTPM: 44.1
Min nTPM: 40.0
Sample A Female 40.0
Sample B Female 42.2
Sample C Male 42.7
Sample D Male 44.1
Ventral hippocampus
nTPM: 42.4
Samples: 4

Max nTPM: 45.9
Min nTPM: 39.4
Sample A Female 39.4
Sample B Female 41.8
Sample C Male 42.3
Sample D Male 45.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.9
Samples: 4

Max nTPM: 42.5
Min nTPM: 35.3
Sample A Male 39.4
Sample B Male 42.5
Sample C Female 38.5
Sample D Female 35.3
Hippocampal formation
nTPM: 37.0
Samples: 4

Max nTPM: 41.8
Min nTPM: 33.5
Sample A Male 36.5
Sample B Male 41.8
Sample C Female 33.5
Sample D Female 36.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.0
69818030 Antisense, RP_050510_04_C06, Mouse strain C57BL/6J (56 days, male) 12.0

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