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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:30.1 nTPM
GTEx:30.1 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:86.9 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 30.1
Samples: 105

Max nTPM: 42.0
Min nTPM: 14.8
Std nTPM: 5.1
Median nTPM: 0.0
377_1 82 years, female 42.0
218_1 71 years, female 41.6
189_1 76 years, male 40.9
163_1 78 years, male 39.5
319_1 81 years, male 38.8
172_1 72 years, female 38.0
321_1 62 years, female 37.7
322_1 76 years, male 37.7
349_1 83 years, male 37.2
406_1 79 years, male 36.9
317_1 60 years, male 36.8
425_1 59 years, female 36.7
376_1 75 years, female 36.6
293_1 68 years, female 35.8
251_1 78 years, male 35.7
2_1 77 years, female 35.6
405_1 91 years, male 35.5
480_1 63 years, male 35.0
318_1 68 years, male 34.7
137_1 83 years, male 34.6
347_1 72 years, male 34.5
404_1 82 years, female 34.0
335_1 73 years, female 33.9
229_1 69 years, female 33.6
292_1 71 years, male 33.6
384_1 83 years, male 33.1
308_1 70 years, female 32.9
379_1 60 years, male 32.9
42_1 85 years, male 32.6
266_1 85 years, male 32.6
320_1 89 years, female 32.6
41_1 94 years, female 32.5
177_1 74 years, male 32.5
243_1 75 years, male 32.2
237_1 82 years, male 32.0
35_1 74 years, female 31.9
495_1 57 years, female 31.9
452_1 88 years, female 31.8
394_1 75 years, female 31.7
506_1 65 years, male 31.7
145_1 84 years, male 31.4
173_1 67 years, male 31.3
291_1 76 years, male 31.2
447_1 81 years, male 31.2
526_1 61 years, male 31.2
139_1 64 years, female 30.5
316_1 62 years, male 30.5
348_1 84 years, male 30.5
386_1 76 years, male 30.5
468_1 89 years, male 30.4
18_1 88 years, male 30.2
389_1 86 years, female 30.2
352_1 62 years, male 30.1
246_1 77 years, male 30.0
264_1 73 years, female 30.0
153_1 70 years, female 29.9
6_1 73 years, female 29.8
375_1 74 years, female 29.5
265_1 87 years, male 29.4
311_1 78 years, male 29.4
355_1 70 years, female 29.4
295_1 61 years, female 29.3
356_1 87 years, female 29.2
517_1 88 years, male 29.2
286_1 68 years, female 28.9
503_1 68 years, male 28.8
351_1 91 years, male 28.6
353_1 82 years, female 28.6
126_1 63 years, male 28.5
350_1 84 years, female 28.5
324_1 76 years, male 28.4
17_1 71 years, male 28.2
314_1 67 years, male 28.1
9_1 66 years, female 27.7
354_1 81 years, female 27.7
499_1 55 years, female 27.7
518_1 75 years, female 27.7
307_1 66 years, female 27.5
109_1 81 years, female 27.4
313_1 79 years, female 27.1
4_1 88 years, female 27.0
115_1 83 years, male 26.9
117_1 61 years, male 26.8
396_1 62 years, male 26.8
288_1 66 years, female 26.5
162_1 79 years, female 26.2
254_1 77 years, female 26.1
315_1 62 years, female 25.8
99_1 64 years, male 25.7
81_1 67 years, male 25.2
119_1 70 years, female 25.2
120_1 70 years, female 24.9
43_1 64 years, female 24.5
217_1 76 years, male 24.5
415_1 77 years, female 23.3
466_1 57 years, female 23.2
142_1 61 years, female 22.9
414_1 84 years, female 22.2
32_1 67 years, male 21.1
413_1 59 years, female 21.0
149_1 88 years, male 20.1
501_1 88 years, male 19.2
89_1 63 years, male 18.8
490_1 67 years, female 17.3
491_1 89 years, female 14.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 40.4
FF:10030-101E3 24-65 years, mixed 40.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.4
Pig sample Sample description nTPM
Retina
nTPM: 18.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.7
Sample A Female 16.7
Sample B Female 19.4
Sample C Male 20.5
Sample D Male 17.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.9
Mouse sample Sample description nTPM
Retina
nTPM: 86.9
Samples: 4

Max nTPM: 96.9
Min nTPM: 83.4
Sample A Male 96.9
Sample B Male 83.4
Sample C Female 83.4
Sample D Female 84.0

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by the Knut & Alice Wallenberg Foundation.