MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA:22.0 nTPM
GTEx:17.9 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:51.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.2
2219 Male, age 76, both hemispheres 21.4
1827 Male, age 72, unknown 18.7
1870 Female, age 42, unknown 18.7
1833 Male, age 53, unknown 18.6
2828 Female, age 72, unknown 18.2
2411 Female, age 72, unknown 18.0
1830 Male, age 51, unknown 17.7
2666 Male, age 74, left hemisphere 17.3
2019 Male, age 18, unknown 16.9
2586 Male, age 75, left hemisphere 16.7
Dorsal raphe nucleus
nTPM: 19.6
2298 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 20.3
1828 Male, age 53, unknown 19.2
2750 Male, age 76, both hemispheres 18.8
2016 Female, age 72, unknown 18.6
Inferior colliculus
nTPM: 20.7
2097 Female, age 72, unknown 22.0
2849 Male, age 72, unknown 20.9
1848 Female, age 42, unknown 20.4
1890 Male, age 53, unknown 19.6
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Pedunculopontine tegmental nucleus
nTPM: 19.1
1921 Female, age 85, both hemispheres 21.0
2334 Male, age 80, both hemispheres 19.1
2338 Male, age 61, both hemispheres 17.3
Periaquaductal grey, anterior
nTPM: 18.8
2502 Female, age 75, unknown 19.2
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 17.9
Periaquaductal grey, dorsal
nTPM: 20.1
1840 Male, age 53, unknown 21.9
2850 Male, age 76, both hemispheres 20.7
1831 Male, age 72, unknown 19.1
2464 Female, age 72, unknown 18.8
Periaquaductal grey, lateral
nTPM: 19.3
2140 Male, age 76, both hemispheres 20.2
2272 Male, age 74, both hemispheres 19.0
2053 Male, age 18, unknown 18.8
Pretectal area
nTPM: 19.2
2224 Female, age 72, unknown 21.0
2273 Male, age 74, both hemispheres 20.3
2667 Female, age 75, unknown 20.1
2825 Male, age 18, unknown 20.1
2316 Male, age 76, right hemisphere 19.7
1817 Female, age 42, unknown 19.1
1944 Female, age 72, unknown 19.1
1816 Male, age 51, unknown 18.8
1815 Male, age 53, unknown 18.3
2007 Male, age 72, unknown 18.1
2407 Male, age 75, both hemispheres 16.7
Red nucleus
nTPM: 17.2
1821 Female, age 72, unknown 18.7
2725 Female, age 75, unknown 18.2
2227 Male, age 72, unknown 17.8
1954 Female, age 42, unknown 17.7
2503 Female, age 72, unknown 17.7
1904 Male, age 53, unknown 17.2
2588 Male, age 74, left hemisphere 16.8
2769 Male, age 72, unknown 16.8
2823 Male, age 76, right hemisphere 16.8
2785 Male, age 18, unknown 16.7
1865 Male, age 51, unknown 16.4
2584 Male, age 75, left hemisphere 15.9
Substantia nigra
nTPM: 19.5
2241 Male, age 72, unknown 22.1
2699 Male, age 18, unknown 21.4
1916 Female, age 42, unknown 21.2
1851 Male, age 51, unknown 21.0
1941 Male, age 53, unknown 19.9
2665 Male, age 74, both hemispheres 19.3
2409 Female, age 72, unknown 18.7
1889 Female, age 72, unknown 18.5
2590 Female, age 75, unknown 16.7
2583 Male, age 75, right hemisphere 16.4
Superior colliculus
nTPM: 18.5
1895 Male, age 76, right hemisphere 21.4
2587 Male, age 74, left hemisphere 19.7
1796 Male, age 53, unknown 19.5
1839 Male, age 51, unknown 19.4
2087 Female, age 72, unknown 18.9
2668 Female, age 75, unknown 18.8
2261 Male, age 18, unknown 18.0
1913 Female, age 42, unknown 17.3
1995 Male, age 72, unknown 16.6
2664 Male, age 75, both hemispheres 15.8
Ventral tegmental area
nTPM: 19.4
2218 Male, age 76, both hemispheres 21.2
1915 Female, age 42, unknown 20.7
1942 Male, age 51, unknown 19.6
2223 Female, age 72, unknown 19.4
2021 Male, age 53, unknown 18.0
2410 Female, age 72, unknown 17.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 32.5
Min nTPM: 11.4
Std nTPM: 3.3
Median nTPM: 17.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 26.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 25.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 25.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 24.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 23.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 23.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 20.6
Min nTPM: 18.4
Sample A Female 20.6
Sample B Female 18.4
Sample C Male 19.7
Sample D Male 19.1
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 20.5
Min nTPM: 16.6
Sample B Female 18.6
Sample C Male 20.5
Sample D Male 16.6
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.3
Sample A Female 21.3
Sample B Female 16.3
Sample C Male 19.4
Sample D Male 16.6
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 19.5
Min nTPM: 17.1
Sample A Female 19.5
Sample B Female 17.1
Sample C Male 19.1
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 53.6
Min nTPM: 48.1
Sample A Male 52.6
Sample B Male 53.1
Sample C Female 48.1
Sample D Female 53.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
69262119 Antisense, RP_050224_01_B04, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.