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HSPB6
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:38.0 nTPM
HPA:38.0 nTPM
GTEx:87.5 nTPM
FANTOM5:90.1 Scaled Tags Per Million
Pig:117.8 nTPM
Mouse:5.0 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044153Antibody HPA054811Antibody CAB001974
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedNot detected-







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.0
2306 Female, age 91, right hemisphere 56.8
2481 Female, age 94, left hemisphere 50.6
2713 Male, age 75, left hemisphere 39.6
2302 Male, age 61, right hemisphere 38.1
2301 Female, age 72, unknown 35.3
1857 Female, age 85, left hemisphere 33.2
1781 Male, age 74, unknown 32.3
1854 Male, age 80, left hemisphere 28.5
2846 Female, age 79, unknown 27.8
Claustrum
nTPM: 27.9
2307 Female, age 91, both hemispheres 38.9
2299 Female, age 85, both hemispheres 36.7
2568 Male, age 61, both hemispheres 27.5
2196 Female, age 79, unknown 27.4
2198 Male, age 80, both hemispheres 25.1
2491 Male, age 75, both hemispheres 25.0
1956 Male, age 74, unknown 24.4
2392 Female, age 94, both hemispheres 23.4
2645 Female, age 72, unknown 22.8
Globus pallidus, externus
nTPM: 36.4
1996 Male, age 80, right hemisphere 45.5
2646 Male, age 61, right hemisphere 42.8
2644 Female, age 94, right hemisphere 35.2
2567 Female, age 72, unknown 34.7
2395 Male, age 75, both hemispheres 34.3
2772 Female, age 79, unknown 33.4
2011 Female, age 91, left hemisphere 33.3
2114 Female, age 85, right hemisphere 32.1
Globus pallidus, internus
nTPM: 34.5
2037 Male, age 80, right hemisphere 40.5
2714 Male, age 75, right hemisphere 39.6
2483 Female, age 94, right hemisphere 38.9
1818 Male, age 74, unknown 35.5
2566 Female, age 72, unknown 33.8
2778 Female, age 91, both hemispheres 33.6
2111 Female, age 85, right hemisphere 31.5
1997 Male, age 61, left hemisphere 22.6
Nucleus accumbens
nTPM: 31.0
2305 Male, age 75, left hemisphere 49.0
2698 Female, age 72, unknown 34.7
2391 Female, age 94, left hemisphere 32.4
1806 Female, age 85, left hemisphere 31.2
2732 Male, age 80, right hemisphere 28.9
1783 Male, age 74, unknown 27.0
2824 Male, age 61, right hemisphere 23.8
1856 Female, age 91, right hemisphere 21.0
Nucleus basalis of Meynert
nTPM: 32.4
2569 Male, age 61, both hemispheres 42.9
2821 Male, age 75, both hemispheres 35.9
2300 Female, age 85, both hemispheres 32.9
2842 Male, age 74, unknown 32.8
2484 Female, age 94, left hemisphere 32.0
2393 Male, age 80, right hemisphere 25.8
2200 Female, age 91, left hemisphere 24.5
Nucleus of the diagonal band
nTPM: 23.2
1979 Male, age 74, unknown 25.9
1812 Female, age 91, both hemispheres 25.3
2195 Female, age 85, both hemispheres 23.1
2775 Male, age 80, right hemisphere 21.4
2029 Male, age 61, right hemisphere 20.5
Olfactory tubercle
nTPM: 22.4
2856 Male, age 75, right hemisphere 24.9
1846 Male, age 80, right hemisphere 23.1
2487 Female, age 94, left hemisphere 21.8
1998 Female, age 91, both hemispheres 19.9
Putamen
nTPM: 37.4
2488 Female, age 85, left hemisphere 75.3
2490 Male, age 61, left hemisphere 49.2
2482 Female, age 94, left hemisphere 35.2
2489 Female, age 72, unknown 34.2
2647 Male, age 75, left hemisphere 33.4
1829 Male, age 74, unknown 31.3
1838 Male, age 80, right hemisphere 27.7
1937 Female, age 91, right hemisphere 25.3
2466 Female, age 79, unknown 24.5
Septal nuclei
nTPM: 23.5
2629 Female, age 94, right hemisphere 29.2
2199 Male, age 80, right hemisphere 26.8
2059 Female, age 85, both hemispheres 23.6
2394 Male, age 61, left hemisphere 22.5
2009 Female, age 91, both hemispheres 21.6
1960 Male, age 74, unknown 20.7
2031 Female, age 72, unknown 20.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 87.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 76.2
Samples: 246

Max nTPM: 258.2
Min nTPM: 12.6
Std nTPM: 37.9
Median nTPM: 67.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 258.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 201.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 175.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 172.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 165.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 157.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 156.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 154.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 153.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 152.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 151.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.5
Samples: 246

Max nTPM: 172.8
Min nTPM: 12.6
Std nTPM: 27.0
Median nTPM: 38.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 172.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 167.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 153.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 137.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 124.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 121.0
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 119.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 113.9
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 108.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 105.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 104.9
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Brain - Putamen (basal ganglia)
Average nTPM: 87.5
Samples: 205

Max nTPM: 500.6
Min nTPM: 19.9
Std nTPM: 53.1
Median nTPM: 73.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 500.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 264.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 221.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 212.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 208.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 202.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 200.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 193.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 191.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 189.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 173.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 90.1
FF:10164-103B2 76 years, female 90.1
Nucleus accumbens
Scaled Tags Per Million: 78.8
FF:10037-101F1 23-56 years, mixed 78.8
Putamen
Scaled Tags Per Million: 71.3
FF:10176-103C5 60 years, female 71.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 117.8
Pig sample Sample description nTPM
Caudate
nTPM: 72.8
Samples: 4

Max nTPM: 104.1
Min nTPM: 51.2
Sample A Female 51.2
Sample B Female 79.4
Sample C Male 104.1
Sample D Male 56.5
Putamen
nTPM: 117.8
Samples: 4

Max nTPM: 170.4
Min nTPM: 56.1
Sample A Female 56.1
Sample B Female 125.7
Sample C Male 170.4
Sample D Male 118.9
Septum
nTPM: 39.7
Samples: 4

Max nTPM: 47.7
Min nTPM: 30.0
Sample A Female 30.0
Sample B Female 40.4
Sample C Male 47.7
Sample D Male 40.8
Ventral pallidum
nTPM: 60.5
Samples: 4

Max nTPM: 96.2
Min nTPM: 39.1
Sample A Female 51.2
Sample B Female 96.2
Sample C Male 55.4
Sample D Male 39.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.4
Sample A Male 5.2
Sample B Male 4.6
Sample C Female 5.0
Sample D Female 4.4
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.7
Sample A Male 7.3
Sample B Male 2.7
Sample C Female 6.6
Sample D Female 3.3
Ventral forebrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.3
Sample A Male 3.0
Sample B Male 4.7
Sample C Female 2.3
Sample D Female 2.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74882616 Antisense, RP_060315_04_F07, Mouse strain C57BL/6J (56 days, male) 0.0
69735162 Antisense, RP_050503_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74882616 Antisense, RP_060315_04_F07, Mouse strain C57BL/6J (56 days, male) 0.0
69735162 Antisense, RP_050503_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.