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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:51.1 nTPM
HPA:43.9 nTPM
GTEx:51.1 nTPM
FANTOM5:59.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 43.9
overview
Male, age 65
Small intestine sample 232
nTPM: 45.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 45.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 41.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 42.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 51.1
Samples: 187

Max nTPM: 93.5
Min nTPM: 27.2
Std nTPM: 11.4
Median nTPM: 49.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 93.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 85.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 84.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 79.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 79.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 77.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 76.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 75.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 75.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 74.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 74.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 73.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 69.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 69.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 68.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 68.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 67.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 66.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 65.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 65.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 65.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 65.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 64.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 64.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 63.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 62.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 62.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 62.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 62.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 62.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 61.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 60.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 60.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 60.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 59.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 59.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 59.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 59.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 59.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 58.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 58.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 57.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 57.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 57.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 57.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 57.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 57.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 56.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 56.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 56.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 56.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 56.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 56.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 55.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 55.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 55.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 55.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 54.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 54.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 54.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 54.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 54.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 54.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 53.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 53.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 53.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 53.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 53.6
GTEX-1192X-2526-SM-59868 50-59 years, male 53.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 53.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 53.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 53.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 53.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 53.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 52.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 52.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 52.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 52.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 51.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 51.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 51.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 51.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 51.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 50.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 50.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 50.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 49.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 49.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 49.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 49.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 49.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 49.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 49.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 49.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 49.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 48.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 48.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 48.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 48.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 48.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 48.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 48.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 48.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 48.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 48.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 48.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 48.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 47.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 47.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 47.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 47.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 47.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 46.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 46.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 46.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 46.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 46.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 46.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 45.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 45.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 45.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 45.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 45.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 45.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 45.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 45.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 45.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 44.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 44.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 44.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 44.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 44.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 44.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 44.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 44.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 44.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 44.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 43.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 43.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 43.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 43.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 43.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 43.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 43.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 43.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 43.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 42.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 42.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 42.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 41.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 41.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 41.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 41.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 41.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 41.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 40.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 40.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 40.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 39.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 39.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 39.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 39.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 38.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 38.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 38.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 38.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 38.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 38.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 38.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 38.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 37.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 37.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 37.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 37.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 36.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 36.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 36.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 36.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 35.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 34.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 33.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 33.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 33.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 31.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 29.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 28.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 27.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 59.7
FF:10024-101D6 15,40,85 years, mixed 59.7

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