ABOUTMENU
HELP
NEWS
MYCBP2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.9 nTPM
HPA:52.9 nTPM
GTEx:52.3 nTPM
FANTOM5:121.3 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:55.9 nTPM
Allen mouse:10.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.1
1857 Female, age 85, left hemisphere 45.3
2846 Female, age 79, unknown 42.5
1781 Male, age 74, unknown 41.0
1854 Male, age 80, left hemisphere 40.7
2713 Male, age 75, left hemisphere 39.0
2481 Female, age 94, left hemisphere 33.6
2302 Male, age 61, right hemisphere 33.2
2301 Female, age 72, unknown 32.9
2306 Female, age 91, right hemisphere 25.8
Claustrum
nTPM: 38.9
2392 Female, age 94, both hemispheres 44.7
2568 Male, age 61, both hemispheres 43.7
2491 Male, age 75, both hemispheres 43.2
2198 Male, age 80, both hemispheres 43.0
1956 Male, age 74, unknown 40.3
2196 Female, age 79, unknown 38.7
2645 Female, age 72, unknown 37.3
2307 Female, age 91, both hemispheres 31.6
2299 Female, age 85, both hemispheres 27.3
Globus pallidus, externus
nTPM: 30.3
2395 Male, age 75, both hemispheres 35.3
2644 Female, age 94, right hemisphere 35.0
2772 Female, age 79, unknown 31.7
2011 Female, age 91, left hemisphere 31.2
2114 Female, age 85, right hemisphere 30.4
2567 Female, age 72, unknown 29.6
1996 Male, age 80, right hemisphere 25.9
2646 Male, age 61, right hemisphere 23.2
Globus pallidus, internus
nTPM: 33.1
1997 Male, age 61, left hemisphere 51.3
2714 Male, age 75, right hemisphere 37.9
2778 Female, age 91, both hemispheres 31.7
2483 Female, age 94, right hemisphere 31.2
1818 Male, age 74, unknown 30.8
2566 Female, age 72, unknown 29.8
2037 Male, age 80, right hemisphere 26.9
2111 Female, age 85, right hemisphere 25.4
Nucleus accumbens
nTPM: 42.3
1856 Female, age 91, right hemisphere 51.7
2824 Male, age 61, right hemisphere 49.4
2305 Male, age 75, left hemisphere 43.1
1806 Female, age 85, left hemisphere 42.8
1783 Male, age 74, unknown 42.6
2698 Female, age 72, unknown 39.0
2391 Female, age 94, left hemisphere 35.3
2732 Male, age 80, right hemisphere 34.3
Nucleus basalis of Meynert
nTPM: 34.1
2200 Female, age 91, left hemisphere 42.7
2393 Male, age 80, right hemisphere 37.6
2484 Female, age 94, left hemisphere 37.4
2821 Male, age 75, both hemispheres 37.1
2300 Female, age 85, both hemispheres 31.8
2842 Male, age 74, unknown 29.5
2569 Male, age 61, both hemispheres 23.0
Nucleus of the diagonal band
nTPM: 52.9
2029 Male, age 61, right hemisphere 60.4
2775 Male, age 80, right hemisphere 57.7
1812 Female, age 91, both hemispheres 56.0
2195 Female, age 85, both hemispheres 52.9
1979 Male, age 74, unknown 37.4
Olfactory tubercle
nTPM: 51.8
2487 Female, age 94, left hemisphere 55.5
1846 Male, age 80, right hemisphere 54.7
1998 Female, age 91, both hemispheres 53.7
2856 Male, age 75, right hemisphere 43.1
Putamen
nTPM: 36.0
1838 Male, age 80, right hemisphere 45.6
2466 Female, age 79, unknown 43.0
1937 Female, age 91, right hemisphere 41.6
1829 Male, age 74, unknown 41.3
2647 Male, age 75, left hemisphere 35.4
2482 Female, age 94, left hemisphere 35.2
2489 Female, age 72, unknown 31.9
2490 Male, age 61, left hemisphere 25.9
2488 Female, age 85, left hemisphere 24.2
Septal nuclei
nTPM: 45.0
2031 Female, age 72, unknown 56.9
1960 Male, age 74, unknown 55.3
2009 Female, age 91, both hemispheres 50.2
2629 Female, age 94, right hemisphere 50.1
2059 Female, age 85, both hemispheres 38.1
2394 Male, age 61, left hemisphere 32.2
2199 Male, age 80, right hemisphere 32.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.9
Samples: 246

Max nTPM: 131.7
Min nTPM: 17.5
Std nTPM: 15.5
Median nTPM: 40.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 131.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 115.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 82.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 81.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 79.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 78.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 75.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 73.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 72.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 72.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.3
Samples: 246

Max nTPM: 95.4
Min nTPM: 18.9
Std nTPM: 16.7
Median nTPM: 53.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 95.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 86.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 86.7
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 86.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 85.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 84.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 83.6
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 82.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 82.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 81.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 81.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 39.5
Samples: 205

Max nTPM: 84.3
Min nTPM: 17.8
Std nTPM: 13.8
Median nTPM: 35.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 84.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 83.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 79.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 78.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 76.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 74.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 68.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 66.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 66.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 65.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.2
FF:10164-103B2 76 years, female 105.2
Nucleus accumbens
Scaled Tags Per Million: 79.7
FF:10037-101F1 23-56 years, mixed 79.7
Putamen
Scaled Tags Per Million: 121.3
FF:10176-103C5 60 years, female 121.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.3
Pig sample Sample description nTPM
Caudate
nTPM: 21.6
Samples: 4

Max nTPM: 22.5
Min nTPM: 20.0
Sample A Female 22.5
Sample B Female 20.0
Sample C Male 21.6
Sample D Male 22.1
Putamen
nTPM: 20.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 19.5
Sample C Male 27.7
Sample D Male 18.9
Septum
nTPM: 23.3
Samples: 4

Max nTPM: 28.1
Min nTPM: 19.0
Sample A Female 23.8
Sample B Female 22.3
Sample C Male 28.1
Sample D Male 19.0
Ventral pallidum
nTPM: 22.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 18.9
Sample A Female 26.0
Sample B Female 21.2
Sample C Male 25.5
Sample D Male 18.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 55.2
Min nTPM: 47.2
Sample A Male 47.2
Sample B Male 48.9
Sample C Female 55.2
Sample D Female 51.3
Septum
nTPM: 46.8
Samples: 4

Max nTPM: 54.8
Min nTPM: 41.5
Sample A Male 54.8
Sample B Male 42.9
Sample C Female 41.5
Sample D Female 48.0
Ventral forebrain
nTPM: 55.9
Samples: 4

Max nTPM: 60.5
Min nTPM: 48.4
Sample A Male 56.1
Sample B Male 58.7
Sample C Female 48.4
Sample D Female 60.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.5
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 9.5
Pallidum
Expression energy: 10.1
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 10.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.