BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.2 nTPM
HPA:46.2 nTPM
GTEx:51.9 nTPM
FANTOM5:121.3 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:55.9 nTPM
Allen mouse:10.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.7
1857 Female, age 85, left hemisphere 37.9
2846 Female, age 79, unknown 37.3
1781 Male, age 74, unknown 35.4
1854 Male, age 80, left hemisphere 34.2
2289 Male, age 61, right hemisphere 33.5
2288 Male, age 75, left hemisphere 31.9
2290 Female, age 72, unknown 31.4
2481 Female, age 94, left hemisphere 27.7
Claustrum
nTPM: 34.2
2392 Female, age 94, both hemispheres 38.9
2491 Male, age 75, both hemispheres 37.8
2568 Male, age 61, both hemispheres 36.7
2198 Male, age 80, both hemispheres 36.4
1956 Male, age 74, unknown 34.6
2284 Female, age 91, both hemispheres 34.5
2196 Female, age 79, unknown 33.4
2645 Female, age 72, unknown 29.9
2292 Female, age 85, both hemispheres 25.7
Globus pallidus, externus
nTPM: 23.0
2395 Male, age 75, both hemispheres 29.8
2772 Female, age 79, unknown 26.2
2567 Female, age 72, unknown 22.6
1996 Male, age 80, right hemisphere 19.5
2646 Male, age 61, right hemisphere 16.7
Globus pallidus, internus
nTPM: 24.3
2287 Male, age 75, right hemisphere 31.6
2778 Female, age 91, both hemispheres 25.6
2483 Female, age 94, right hemisphere 25.3
1818 Male, age 74, unknown 25.1
2566 Female, age 72, unknown 22.8
2037 Male, age 80, right hemisphere 20.6
2111 Female, age 85, right hemisphere 18.7
Nucleus accumbens
nTPM: 35.1
1856 Female, age 91, right hemisphere 45.5
2824 Male, age 61, right hemisphere 42.3
1783 Male, age 74, unknown 36.9
1806 Female, age 85, left hemisphere 35.6
2286 Male, age 75, left hemisphere 31.6
2698 Female, age 72, unknown 31.6
2391 Female, age 94, left hemisphere 29.3
2732 Male, age 80, right hemisphere 27.9
Nucleus basalis of Meynert
nTPM: 27.7
2821 Male, age 75, both hemispheres 31.6
2484 Female, age 94, left hemisphere 31.5
2393 Male, age 80, right hemisphere 31.2
2569 Male, age 61, both hemispheres 16.5
Nucleus of the diagonal band
nTPM: 46.2
2029 Male, age 61, right hemisphere 53.0
2775 Male, age 80, right hemisphere 51.0
1812 Female, age 91, both hemispheres 49.8
2195 Female, age 85, both hemispheres 45.2
1979 Male, age 74, unknown 31.7
Olfactory tubercle
nTPM: 45.8
2487 Female, age 94, left hemisphere 49.8
1846 Male, age 80, right hemisphere 48.0
1998 Female, age 91, both hemispheres 47.5
2856 Male, age 75, right hemisphere 37.8
Putamen
nTPM: 33.1
1838 Male, age 80, right hemisphere 39.1
2466 Female, age 79, unknown 37.8
1829 Male, age 74, unknown 35.7
1937 Female, age 91, right hemisphere 35.5
2647 Male, age 75, left hemisphere 29.9
2482 Female, age 94, left hemisphere 29.3
2489 Female, age 72, unknown 24.8
Septal nuclei
nTPM: 38.4
1960 Male, age 74, unknown 49.8
2031 Female, age 72, unknown 48.8
2629 Female, age 94, right hemisphere 44.3
2009 Female, age 91, both hemispheres 44.0
2059 Female, age 85, both hemispheres 31.1
2199 Male, age 80, right hemisphere 25.6
2394 Male, age 61, left hemisphere 25.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.6
Samples: 246

Max nTPM: 130.6
Min nTPM: 17.3
Std nTPM: 15.4
Median nTPM: 39.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 130.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 114.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 82.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 80.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 79.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 77.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 75.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 73.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 72.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.9
Samples: 246

Max nTPM: 94.6
Min nTPM: 18.8
Std nTPM: 16.6
Median nTPM: 52.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 94.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 86.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 86.0
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 85.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 84.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 84.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 82.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 81.9
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 81.8
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 81.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 81.0
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Brain - Putamen (basal ganglia)
Average nTPM: 39.2
Samples: 205

Max nTPM: 83.7
Min nTPM: 17.7
Std nTPM: 13.7
Median nTPM: 35.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 83.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 83.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 79.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 77.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 75.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 73.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 67.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 66.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 66.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 65.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.2
FF:10164-103B2 76 years, female 105.2
Globus pallidus
Scaled Tags Per Million: 62.6
FF:10161-103A8 76 years, female 71.5
FF:10175-103C4 60 years, female 53.6
Nucleus accumbens
Scaled Tags Per Million: 79.7
FF:10037-101F1 23-56 years, mixed 79.7
Putamen
Scaled Tags Per Million: 121.3
FF:10176-103C5 60 years, female 121.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.3
Pig sample Sample description nTPM
Caudate
nTPM: 21.6
Samples: 4

Max nTPM: 22.5
Min nTPM: 20.0
Sample A Female 22.5
Sample B Female 20.0
Sample C Male 21.6
Sample D Male 22.1
Putamen
nTPM: 20.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 19.5
Sample C Male 27.7
Sample D Male 18.9
Septum
nTPM: 23.3
Samples: 4

Max nTPM: 28.1
Min nTPM: 19.0
Sample A Female 23.8
Sample B Female 22.3
Sample C Male 28.1
Sample D Male 19.0
Ventral pallidum
nTPM: 22.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 18.9
Sample A Female 26.0
Sample B Female 21.2
Sample C Male 25.5
Sample D Male 18.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 55.2
Min nTPM: 47.2
Sample A Male 47.2
Sample B Male 48.9
Sample C Female 55.2
Sample D Female 51.3
Septum
nTPM: 46.8
Samples: 4

Max nTPM: 54.8
Min nTPM: 41.5
Sample A Male 54.8
Sample B Male 42.9
Sample C Female 41.5
Sample D Female 48.0
Ventral forebrain
nTPM: 55.9
Samples: 4

Max nTPM: 60.5
Min nTPM: 48.4
Sample A Male 56.1
Sample B Male 58.7
Sample C Female 48.4
Sample D Female 60.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.5
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 9.5
Pallidum
Expression energy: 10.1
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

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