BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:40.5 nTPM
GTEx:16.0 nTPM
FANTOM5:85.1 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:53.7 nTPM
Allen mouse:7.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.4
2481 Female, age 94, left hemisphere 40.4
2288 Male, age 75, left hemisphere 36.7
2846 Female, age 79, unknown 36.0
1857 Female, age 85, left hemisphere 35.2
1854 Male, age 80, left hemisphere 33.6
2290 Female, age 72, unknown 32.5
1781 Male, age 74, unknown 31.4
2289 Male, age 61, right hemisphere 29.3
Globus pallidus, externus
nTPM: 37.4
1996 Male, age 80, right hemisphere 44.5
2772 Female, age 79, unknown 42.4
2395 Male, age 75, both hemispheres 36.5
2646 Male, age 61, right hemisphere 34.9
2567 Female, age 72, unknown 28.5
Globus pallidus, internus
nTPM: 40.5
2287 Male, age 75, right hemisphere 46.7
2778 Female, age 91, both hemispheres 44.2
2111 Female, age 85, right hemisphere 42.4
1818 Male, age 74, unknown 40.6
2483 Female, age 94, right hemisphere 40.3
2037 Male, age 80, right hemisphere 38.3
2566 Female, age 72, unknown 31.1
Nucleus accumbens
nTPM: 35.5
2391 Female, age 94, left hemisphere 40.9
2286 Male, age 75, left hemisphere 40.3
2698 Female, age 72, unknown 36.6
1806 Female, age 85, left hemisphere 34.8
2824 Male, age 61, right hemisphere 34.4
1783 Male, age 74, unknown 32.8
1856 Female, age 91, right hemisphere 32.6
2732 Male, age 80, right hemisphere 31.4
Nucleus basalis of Meynert
nTPM: 31.3
2821 Male, age 75, both hemispheres 32.7
2484 Female, age 94, left hemisphere 31.6
2569 Male, age 61, both hemispheres 31.0
2393 Male, age 80, right hemisphere 29.8
Nucleus of the diagonal band
nTPM: 33.0
2029 Male, age 61, right hemisphere 36.9
1812 Female, age 91, both hemispheres 36.7
2775 Male, age 80, right hemisphere 33.1
2195 Female, age 85, both hemispheres 30.6
1979 Male, age 74, unknown 27.9
Putamen
nTPM: 32.0
2482 Female, age 94, left hemisphere 38.7
1937 Female, age 91, right hemisphere 33.4
1829 Male, age 74, unknown 33.1
1838 Male, age 80, right hemisphere 31.9
2647 Male, age 75, left hemisphere 30.6
2466 Female, age 79, unknown 30.3
2489 Female, age 72, unknown 25.9
Septal nuclei
nTPM: 32.3
2031 Female, age 72, unknown 38.2
2394 Male, age 61, left hemisphere 35.0
1960 Male, age 74, unknown 32.0
2629 Female, age 94, right hemisphere 31.3
2009 Female, age 91, both hemispheres 30.9
2199 Male, age 80, right hemisphere 29.4
2059 Female, age 85, both hemispheres 29.1
Stria terminalis, bed nucleus
nTPM: 29.8
1974 Female, age 91, both hemispheres 32.6
2486 Female, age 94, both hemispheres 31.8
2201 Male, age 74, unknown 25.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.0
Samples: 246

Max nTPM: 29.1
Min nTPM: 9.1
Std nTPM: 2.8
Median nTPM: 15.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 25.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 24.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 23.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 23.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 22.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 22.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 21.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 21.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.1
Samples: 246

Max nTPM: 27.7
Min nTPM: 7.5
Std nTPM: 3.0
Median nTPM: 14.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 27.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 26.6
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 25.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 24.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 24.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 23.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 22.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 21.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 21.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 20.8
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Brain - Putamen (basal ganglia)
Average nTPM: 15.7
Samples: 205

Max nTPM: 25.3
Min nTPM: 9.0
Std nTPM: 2.9
Median nTPM: 15.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 25.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 25.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 25.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 22.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 22.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 22.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 21.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 21.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 21.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 21.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 21.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.1
FF:10164-103B2 76 years, female 85.1
Nucleus accumbens
Scaled Tags Per Million: 54.4
FF:10037-101F1 23-56 years, mixed 54.4
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8
Globus pallidus
Scaled Tags Per Million: 72.4
FF:10161-103A8 76 years, female 79.6
FF:10175-103C4 60 years, female 65.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.0
Pig sample Sample description nTPM
Caudate
nTPM: 24.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.0
Sample A Female 26.9
Sample B Female 22.0
Sample C Male 24.9
Sample D Male 24.9
Putamen
nTPM: 32.0
Samples: 4

Max nTPM: 41.4
Min nTPM: 23.3
Sample A Female 34.1
Sample B Female 23.3
Sample C Male 41.4
Sample D Male 29.0
Septum
nTPM: 29.2
Samples: 4

Max nTPM: 33.5
Min nTPM: 25.2
Sample A Female 33.5
Sample B Female 25.2
Sample C Male 31.5
Sample D Male 26.5
Ventral pallidum
nTPM: 27.7
Samples: 4

Max nTPM: 29.9
Min nTPM: 23.9
Sample A Female 29.9
Sample B Female 23.9
Sample C Male 28.8
Sample D Male 28.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.7
Samples: 4

Max nTPM: 56.4
Min nTPM: 52.4
Sample A Male 53.1
Sample B Male 52.8
Sample C Female 56.4
Sample D Female 52.4
Septum
nTPM: 43.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 38.6
Sample A Male 38.6
Sample B Male 46.7
Sample C Female 44.7
Sample D Female 45.5
Ventral forebrain
nTPM: 46.0
Samples: 4

Max nTPM: 51.0
Min nTPM: 41.3
Sample A Male 50.3
Sample B Male 41.5
Sample C Female 41.3
Sample D Female 51.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.7
77465054 Antisense, RP_070129_03_A10, Mouse strain C57BL/6J (56 days, male) 7.7
Pallidum
Expression energy: 4.6
77465054 Antisense, RP_070129_03_A10, Mouse strain C57BL/6J (56 days, male) 4.6

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