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TISSUE PRIMARY DATA PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:120.6 nTPM
HPA:120.6 nTPM
FANTOM5:575.4 Scaled Tags Per Million
Pig:128.3 nTPM
Allen mouse:0.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 120.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 90.0
2188 Female, age 91, both hemispheres 107.2
2090 Male, age 80, both hemispheres 96.0
2301 Female, age 85, both hemispheres 93.1
1984 Male, age 76, both hemispheres 63.7
Dorsal cochlear nucleus
nTPM: 87.6
2378 Male, age 80, both hemispheres 97.3
2802 Male, age 74, right hemisphere 93.2
2187 Female, age 91, both hemispheres 92.5
2058 Male, age 76, both hemispheres 81.6
2370 Male, age 61, both hemispheres 73.2
Dorsal tegmental nucleus
nTPM: 76.0
2083 Male, age 80, both hemispheres 90.5
2326 Male, age 74, both hemispheres 88.5
1936 Male, age 76, left hemisphere 70.1
2358 Male, age 61, both hemispheres 55.0
Dorsolateral tegmental area
nTPM: 83.0
2751 Female, age 85, both hemispheres 113.2
2654 Male, age 80, both hemispheres 92.2
2337 Male, age 61, both hemispheres 85.1
2360 Male, age 74, both hemispheres 68.0
2141 Male, age 76, both hemispheres 56.3
Kolliker-Fuse nucleus
nTPM: 91.4
2793 Female, age 91, left hemisphere 104.3
2315 Male, age 76, right hemisphere 87.9
2163 Male, age 80, both hemispheres 82.0
Lateral lemniscal nuclei
nTPM: 93.5
2320 Female, age 91, left hemisphere 105.2
2746 Female, age 85, left hemisphere 99.6
2036 Male, age 80, both hemispheres 96.8
2453 Male, age 74, right hemisphere 86.2
2169 Male, age 76, both hemispheres 79.5
Lateral parabrachial nucleus
nTPM: 100.0
2792 Male, age 76, both hemispheres 135.4
2013 Male, age 80, both hemispheres 104.1
2790 Male, age 61, both hemispheres 81.2
2139 Female, age 85, right hemisphere 79.2
Lateral vestibular nucleus
nTPM: 75.5
2311 Male, age 80, both hemispheres 79.5
2184 Male, age 76, both hemispheres 71.6
Locus coeruleus
nTPM: 65.8
2014 Male, age 55, unknown 72.3
2317 Female, age 72, unknown 70.2
2788 Male, age 74, unknown 69.8
2162 Male, age 80, both hemispheres 68.7
2720 Male, age 74, both hemispheres 62.3
2123 Female, age 91, both hemispheres 59.9
1980 Male, age 76, both hemispheres 57.7
Medial olivary nucleus
nTPM: 120.6
1943 Male, age 61, both hemispheres 157.8
1962 Male, age 76, both hemispheres 116.0
2138 Female, age 91, both hemispheres 107.8
2851 Male, age 80, both hemispheres 100.7
Medial parabrachial nucleus
nTPM: 81.7
2854 Male, age 80, both hemispheres 89.0
2170 Female, age 91, both hemispheres 88.8
2463 Female, age 85, right hemisphere 86.0
2786 Male, age 76, both hemispheres 76.7
2156 Male, age 61, both hemispheres 68.1
Medial periolivary nuclei
nTPM: 92.4
2791 Male, age 74, right hemisphere 112.3
2081 Male, age 80, both hemispheres 107.1
2458 Female, age 91, both hemispheres 88.7
2063 Male, age 76, both hemispheres 84.2
2171 Female, age 85, both hemispheres 69.9
Motor facial nucleus
nTPM: 88.1
2365 Male, age 74, right hemisphere 101.3
2697 Female, age 85, both hemispheres 94.8
2126 Male, age 61, both hemispheres 92.3
2327 Male, age 80, both hemispheres 82.0
2795 Female, age 91, both hemispheres 81.7
2062 Male, age 76, both hemispheres 76.6
Motor trigeminal nucleus
nTPM: 79.6
2321 Female, age 91, both hemispheres 89.7
2560 Male, age 74, both hemispheres 87.7
2079 Male, age 80, both hemispheres 80.4
2309 Male, age 76, both hemispheres 76.0
2335 Male, age 61, both hemispheres 64.0
Nuclei of the trapezoid body
nTPM: 83.4
2166 Male, age 80, both hemispheres 90.4
2368 Female, age 91, both hemispheres 90.3
2159 Male, age 61, both hemispheres 86.9
1983 Male, age 76, both hemispheres 83.6
2735 Female, age 85, both hemispheres 65.8
Paramedian reticular nucleus
nTPM: 90.0
2052 Male, age 76, both hemispheres 91.5
2057 Male, age 80, both hemispheres 90.9
2313 Male, age 61, both hemispheres 89.4
2050 Female, age 85, both hemispheres 88.4
Pontine nuclei
nTPM: 98.3
2454 Male, age 74, left hemisphere 136.3
2319 Female, age 91, both hemispheres 115.8
2109 Female, age 72, unknown 95.7
2727 Male, age 61, right hemisphere 95.5
1863 Male, age 55, unknown 92.5
2115 Male, age 80, left hemisphere 90.7
1968 Male, age 76, left hemisphere 87.9
2787 Female, age 85, both hemispheres 72.0
Pontine raphe nucleus
nTPM: 77.2
2122 Female, age 85, midline 80.0
2853 Male, age 76, midline 74.4
Posteroventral cochlear nucleus
nTPM: 97.8
2135 Female, age 91, both hemispheres 124.3
2341 Male, age 80, both hemispheres 115.0
2070 Male, age 76, both hemispheres 91.2
2752 Female, age 85, both hemispheres 80.6
2371 Male, age 61, both hemispheres 78.2
Principal sensory trigeminal nucleus
nTPM: 79.6
2367 Female, age 91, left hemisphere 104.1
2008 Male, age 80, left hemisphere 80.2
2324 Male, age 76, both hemispheres 73.2
2158 Male, age 61, both hemispheres 61.0
Reticular pontine nucleus, caudal
nTPM: 95.7
2457 Female, age 91, both hemispheres 110.5
2559 Male, age 74, both hemispheres 100.7
2092 Male, age 76, both hemispheres 94.9
2332 Male, age 80, right hemisphere 76.7
Reticular pontine nucleus, oral
nTPM: 100.8
2366 Female, age 91, both hemispheres 113.1
1939 Male, age 80, both hemispheres 103.8
2361 Male, age 74, both hemispheres 103.5
2012 Female, age 85, both hemispheres 96.7
2167 Male, age 76, both hemispheres 87.0
Reticulotegmental nucleus
nTPM: 79.5
2322 Female, age 91, both hemispheres 87.3
2333 Male, age 80, both hemispheres 86.3
2452 Male, age 74, both hemispheres 81.8
2325 Male, age 76, both hemispheres 62.8
Spinal trigeminal nucleus, oral
nTPM: 78.4
1978 Male, age 76, both hemispheres 83.7
2164 Male, age 80, both hemispheres 78.3
2737 Female, age 85, both hemispheres 73.3
Subcoeruleus area
nTPM: 86.4
2369 Female, age 85, left hemisphere 130.2
1958 Male, age 80, both hemispheres 86.6
2089 Male, age 76, left hemisphere 78.7
2323 Female, age 91, left hemisphere 68.7
2451 Male, age 74, both hemispheres 68.0
Superior olive
nTPM: 94.6
2364 Male, age 74, right hemisphere 106.4
2020 Male, age 76, both hemispheres 101.5
2329 Male, age 80, right hemisphere 91.7
1875 Female, age 85, both hemispheres 90.1
2561 Female, age 91, both hemispheres 83.0
Superior vestibular nucleus
nTPM: 78.5
2015 Male, age 80, both hemispheres 84.3
2383 Male, age 74, both hemispheres 81.3
2061 Male, age 76, both hemispheres 69.9
Ventral periolivary nuclei
nTPM: 84.5
2023 Male, age 76, both hemispheres 116.9
2165 Male, age 80, both hemispheres 81.7
2794 Female, age 91, left hemisphere 72.9
2130 Female, age 85, both hemispheres 66.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 95.0
2840 Female, age 85, both hemispheres 102.4
2456 Female, age 91, both hemispheres 97.7
1959 Male, age 76, both hemispheres 95.3
2161 Male, age 80, both hemispheres 92.8
2359 Male, age 61, both hemispheres 91.9
2449 Male, age 74, both hemispheres 90.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 575.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 575.4
FF:10165-103B3 76 years, female 673.2
FF:10182-103D2 60 years, female 477.6
Pons
Scaled Tags Per Million: 399.1
FF:10033-101E6 18-54 years, mixed 399.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 128.3
Pig sample Sample description nTPM
Pons
nTPM: 128.3
Samples: 4

Max nTPM: 155.7
Min nTPM: 107.2
Sample A Female 111.2
Sample B Female 107.2
Sample C Male 139.0
Sample D Male 155.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.0
69736028 Antisense, RP_050503_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.