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CRLF1
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  • CRLF1
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:22.0 nTPM
HPA:22.0 nTPM
GTEx:13.2 nTPM
FANTOM5:9.1 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:21.1 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041493Antibody HPA041793
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Hippocampus
nTPM: 13.0
2529 Female, age 94, left hemisphere 16.3
1911 Female, age 85, right hemisphere 15.2
2621 Female, age 67, right hemisphere 12.4
1898 Male, age 80, left hemisphere 11.6
2148 Female, age 91, left hemisphere 11.5
1855 Male, age 76, left hemisphere 11.1
Dentate gyrus
nTPM: 15.8
2246 Female, age 85, both hemispheres 20.4
2010 Male, age 76, both hemispheres 19.5
2528 Male, age 74, both hemispheres 18.3
1927 Female, age 91, both hemispheres 12.7
2531 Female, age 67, both hemispheres 12.4
2530 Female, age 94, left hemisphere 11.8
Entorhinal gyrus
nTPM: 14.7
2117 Female, age 91, right hemisphere 19.6
2686 Male, age 75, right hemisphere 16.6
1787 Male, age 76, left hemisphere 14.9
1938 Female, age 85, left hemisphere 13.3
2613 Female, age 94, left hemisphere 12.1
2764 Male, age 80, right hemisphere 11.7
Hippocampus, CA1
nTPM: 14.4
2082 Female, age 91, right hemisphere 21.3
2045 Male, age 76, both hemispheres 16.8
1873 Female, age 85, both hemispheres 14.4
2527 Male, age 74, both hemispheres 11.4
2749 Male, age 80, left hemisphere 8.2
Hippocampus, CA2
nTPM: 16.0
2249 Male, age 74, both hemispheres 23.0
2437 Female, age 94, left hemisphere 18.1
1940 Female, age 85, left hemisphere 16.5
2113 Female, age 91, right hemisphere 15.4
1892 Male, age 76, both hemispheres 13.5
1963 Male, age 80, left hemisphere 9.6
Hippocampus, CA3
nTPM: 12.9
2436 Male, age 74, both hemispheres 15.3
1867 Male, age 76, both hemispheres 13.9
2620 Female, age 94, left hemisphere 13.3
1891 Female, age 85, both hemispheres 12.8
2137 Male, age 80, left hemisphere 11.7
2861 Female, age 67, both hemispheres 10.4
Parahippocampal cortex
nTPM: 17.3
2250 Female, age 67, right hemisphere 24.0
2622 Female, age 67, right hemisphere 19.4
2693 Female, age 94, both hemispheres 18.5
2245 Female, age 91, both hemispheres 17.9
1933 Female, age 85, both hemispheres 17.2
2692 Male, age 74, both hemispheres 17.0
1990 Female, age 91, right hemisphere 15.9
2018 Male, age 76, both hemispheres 14.9
2532 Female, age 72, left hemisphere 14.8
1850 Male, age 80, both hemispheres 13.7
Perirhinal gyrus
nTPM: 22.0
2521 Female, age 94, right hemisphere 29.4
1841 Female, age 85, right hemisphere 23.0
1847 Female, age 91, left hemisphere 21.4
1794 Male, age 80, right hemisphere 18.6
2848 Male, age 76, right hemisphere 17.5
Subiculum
nTPM: 15.5
2619 Male, age 74, both hemispheres 22.9
2438 Female, age 94, left hemisphere 19.6
1977 Female, age 85, both hemispheres 16.1
2729 Female, age 91, right hemisphere 12.3
2042 Male, age 76, both hemispheres 11.9
1901 Male, age 80, both hemispheres 10.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 67.8
Min nTPM: 0.2
Std nTPM: 13.2
Median nTPM: 9.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 67.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 64.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 61.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 57.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 56.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 50.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 50.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 50.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 47.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 44.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 42.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 42.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 40.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 40.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 37.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 36.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 35.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 33.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 30.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 30.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 30.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 30.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 28.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 28.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 27.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 24.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 24.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 23.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 22.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 21.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 20.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 20.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 19.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 19.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 19.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 19.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 19.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 19.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 18.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 18.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 18.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 18.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 18.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 17.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 17.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 17.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 17.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 17.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 16.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 16.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 16.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 16.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 16.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 15.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 15.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 15.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 15.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 15.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 14.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 14.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 14.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 14.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 14.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 14.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 13.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 13.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 13.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 13.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 13.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 13.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 13.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 13.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 13.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 12.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 12.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 12.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 12.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 12.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 11.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 11.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 11.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 11.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 11.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 11.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 10.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 10.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 10.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 10.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 9.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 9.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 9.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 9.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 9.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 9.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 9.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 9.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 9.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 9.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 9.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 9.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 8.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 8.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 8.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 8.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 8.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 8.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 8.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 8.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 7.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 7.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 7.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 7.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 7.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 7.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 7.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 7.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 7.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 6.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 6.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 6.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 6.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 6.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 5.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 5.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 5.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 5.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 5.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 5.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 5.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 5.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 5.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 5.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 5.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 5.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 4.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 4.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 4.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 4.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 4.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 4.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 4.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 4.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 4.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 4.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 4.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 4.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 4.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 4.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 4.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 4.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 4.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 3.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 3.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 3.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 3.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 3.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 3.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 3.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 3.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 3.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 3.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 3.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 3.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 3.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 3.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 3.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 3.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 3.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 2.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 2.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 2.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 2.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 2.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 2.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 2.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 2.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 2.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 2.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 2.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 2.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 2.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 1.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 1.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 0.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 0.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 9.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.1
FF:10153-102I9 76 years, female 14.1
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 0.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 0.9
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.3
Sample A Female 1.3
Sample B Female 0.8
Sample C Male 0.3
Sample D Male 1.1
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.6
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.4
Subiculum
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.6
Sample B Female 0.4
Sample C Male 0.3
Sample D Male 0.4
Ventral hippocampus
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.8
Sample D Male 0.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 0.8
Sample A Male 6.1
Sample B Male 0.8
Sample C Female 8.8
Sample D Female 2.5
Hippocampal formation
nTPM: 21.1
Samples: 4

Max nTPM: 30.3
Min nTPM: 15.9
Sample A Male 15.9
Sample B Male 30.3
Sample C Female 18.3
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69608064 Antisense, RP_050426_03_D09, Mouse strain C57BL/6J (56 days, male) 3.3
72283808 Antisense, RP_051027_01_C03, Mouse strain C57BL/6J (56 days, male) 2.8

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