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TAC1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:27.1 nTPM
HPA:27.1 nTPM
GTEx:238.3 nTPM
FANTOM5:180.8 Scaled Tags Per Million
Pig:388.8 nTPM
Mouse:560.0 nTPM
Allen mouse:9.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014429
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.4
1854 Male, age 80, left hemisphere 45.7
2713 Male, age 75, left hemisphere 40.2
2846 Female, age 79, unknown 34.6
1857 Female, age 85, left hemisphere 32.8
1781 Male, age 74, unknown 24.0
2481 Female, age 94, left hemisphere 21.8
2301 Female, age 72, unknown 3.9
2306 Female, age 91, right hemisphere 3.8
2302 Male, age 61, right hemisphere 3.5
Claustrum
nTPM: 19.1
2307 Female, age 91, both hemispheres 117.1
2196 Female, age 79, unknown 11.7
2392 Female, age 94, both hemispheres 8.3
2568 Male, age 61, both hemispheres 8.0
2198 Male, age 80, both hemispheres 7.0
1956 Male, age 74, unknown 6.5
2645 Female, age 72, unknown 4.6
2491 Male, age 75, both hemispheres 4.4
2299 Female, age 85, both hemispheres 4.2
Globus pallidus, externus
nTPM: 7.3
2644 Female, age 94, right hemisphere 22.7
2646 Male, age 61, right hemisphere 8.9
2395 Male, age 75, both hemispheres 7.6
2772 Female, age 79, unknown 4.2
1996 Male, age 80, right hemisphere 4.1
2567 Female, age 72, unknown 4.0
2011 Female, age 91, left hemisphere 3.9
2114 Female, age 85, right hemisphere 3.0
Globus pallidus, internus
nTPM: 8.6
1997 Male, age 61, left hemisphere 32.8
2483 Female, age 94, right hemisphere 10.6
2714 Male, age 75, right hemisphere 5.1
2566 Female, age 72, unknown 4.8
1818 Male, age 74, unknown 4.2
2037 Male, age 80, right hemisphere 4.2
2778 Female, age 91, both hemispheres 3.9
2111 Female, age 85, right hemisphere 3.2
Nucleus accumbens
nTPM: 27.1
1856 Female, age 91, right hemisphere 51.3
1783 Male, age 74, unknown 39.9
2824 Male, age 61, right hemisphere 35.1
2698 Female, age 72, unknown 31.3
1806 Female, age 85, left hemisphere 29.5
2391 Female, age 94, left hemisphere 13.6
2732 Male, age 80, right hemisphere 12.1
2305 Male, age 75, left hemisphere 4.2
Nucleus basalis of Meynert
nTPM: 19.9
2393 Male, age 80, right hemisphere 48.5
2484 Female, age 94, left hemisphere 35.0
2821 Male, age 75, both hemispheres 20.2
2300 Female, age 85, both hemispheres 18.4
2569 Male, age 61, both hemispheres 8.5
2200 Female, age 91, left hemisphere 5.0
2842 Male, age 74, unknown 3.9
Nucleus of the diagonal band
nTPM: 7.2
1812 Female, age 91, both hemispheres 8.8
2775 Male, age 80, right hemisphere 8.0
1979 Male, age 74, unknown 7.7
2195 Female, age 85, both hemispheres 6.3
2029 Male, age 61, right hemisphere 5.1
Olfactory tubercle
nTPM: 6.9
1998 Female, age 91, both hemispheres 7.3
2487 Female, age 94, left hemisphere 7.3
1846 Male, age 80, right hemisphere 7.2
2856 Male, age 75, right hemisphere 5.7
Putamen
nTPM: 27.0
1829 Male, age 74, unknown 47.6
1937 Female, age 91, right hemisphere 45.4
2466 Female, age 79, unknown 40.2
1838 Male, age 80, right hemisphere 39.5
2489 Female, age 72, unknown 23.6
2647 Male, age 75, left hemisphere 18.6
2482 Female, age 94, left hemisphere 16.3
2490 Male, age 61, left hemisphere 7.6
2488 Female, age 85, left hemisphere 4.2
Septal nuclei
nTPM: 6.9
1960 Male, age 74, unknown 10.0
2031 Female, age 72, unknown 9.5
2009 Female, age 91, both hemispheres 6.5
2394 Male, age 61, left hemisphere 6.5
2629 Female, age 94, right hemisphere 6.4
2059 Female, age 85, both hemispheres 6.1
2199 Male, age 80, right hemisphere 3.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 238.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 238.3
Samples: 246

Max nTPM: 1281.6
Min nTPM: 0.8
Std nTPM: 178.6
Median nTPM: 218.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1281.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 762.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 723.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 680.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 678.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 660.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 642.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 632.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 613.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 611.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 602.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 159.7
Samples: 246

Max nTPM: 1266.8
Min nTPM: 1.8
Std nTPM: 117.3
Median nTPM: 146.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 1266.8
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 489.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 412.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 366.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 356.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 352.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 348.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 330.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 329.0
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 324.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 324.3
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Brain - Putamen (basal ganglia)
Average nTPM: 195.7
Samples: 205

Max nTPM: 719.3
Min nTPM: 1.4
Std nTPM: 140.0
Median nTPM: 181.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 719.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 668.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 594.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 554.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 526.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 491.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 490.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 486.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 481.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 467.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 462.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.9
FF:10164-103B2 76 years, female 78.9
Nucleus accumbens
Scaled Tags Per Million: 114.5
FF:10037-101F1 23-56 years, mixed 114.5
Putamen
Scaled Tags Per Million: 180.8
FF:10176-103C5 60 years, female 180.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 388.8
Pig sample Sample description nTPM
Caudate
nTPM: 264.5
Samples: 4

Max nTPM: 324.8
Min nTPM: 206.5
Sample A Female 206.5
Sample B Female 233.7
Sample C Male 324.8
Sample D Male 292.8
Putamen
nTPM: 388.8
Samples: 4

Max nTPM: 690.4
Min nTPM: 108.0
Sample A Female 108.0
Sample B Female 385.4
Sample C Male 690.4
Sample D Male 371.4
Septum
nTPM: 94.0
Samples: 4

Max nTPM: 200.0
Min nTPM: 2.9
Sample A Female 200.0
Sample B Female 159.4
Sample C Male 13.6
Sample D Male 2.9
Ventral pallidum
nTPM: 183.1
Samples: 4

Max nTPM: 269.1
Min nTPM: 27.5
Sample A Female 269.1
Sample B Female 232.5
Sample C Male 27.5
Sample D Male 203.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 560.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 489.6
Samples: 4

Max nTPM: 516.3
Min nTPM: 450.8
Sample A Male 500.3
Sample B Male 516.3
Sample C Female 491.0
Sample D Female 450.8
Septum
nTPM: 75.6
Samples: 4

Max nTPM: 124.4
Min nTPM: 35.2
Sample A Male 124.4
Sample B Male 35.2
Sample C Female 85.3
Sample D Female 57.4
Ventral forebrain
nTPM: 560.1
Samples: 4

Max nTPM: 674.5
Min nTPM: 507.7
Sample A Male 520.6
Sample B Male 507.7
Sample C Female 674.5
Sample D Female 537.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.2
1038 Antisense, RP_Baylor_103056, Mouse strain C57BL/6J (56 days, male) 9.2
1039 Antisense, RP_Baylor_103056, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 5.6
1039 Antisense, RP_Baylor_103056, Mouse strain C57BL/6J (56 days, male) 5.6
1038 Antisense, RP_Baylor_103056, Mouse strain C57BL/6J (56 days, male) 2.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.