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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.3 nTPM
HPA:11.3 nTPM
GTEx:12.7 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:31.8 nTPM
Allen mouse:1.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.7
1781 Male, age 74, unknown 12.1
2481 Female, age 94, left hemisphere 10.9
1857 Female, age 85, left hemisphere 10.8
2846 Female, age 79, unknown 9.2
1854 Male, age 80, left hemisphere 8.9
2713 Male, age 75, left hemisphere 8.4
2302 Male, age 61, right hemisphere 4.5
2301 Female, age 72, unknown 4.1
2306 Female, age 91, right hemisphere 0.8
Claustrum
nTPM: 3.3
2196 Female, age 79, unknown 6.6
2491 Male, age 75, both hemispheres 4.3
2645 Female, age 72, unknown 4.2
2392 Female, age 94, both hemispheres 3.9
2568 Male, age 61, both hemispheres 3.4
1956 Male, age 74, unknown 3.1
2198 Male, age 80, both hemispheres 2.9
2299 Female, age 85, both hemispheres 1.3
2307 Female, age 91, both hemispheres 0.0
Globus pallidus, externus
nTPM: 6.1
2772 Female, age 79, unknown 13.0
2114 Female, age 85, right hemisphere 8.9
2644 Female, age 94, right hemisphere 7.9
2646 Male, age 61, right hemisphere 6.2
1996 Male, age 80, right hemisphere 5.2
2567 Female, age 72, unknown 3.1
2395 Male, age 75, both hemispheres 3.0
2011 Female, age 91, left hemisphere 1.2
Globus pallidus, internus
nTPM: 5.0
1997 Male, age 61, left hemisphere 12.9
2483 Female, age 94, right hemisphere 7.4
2714 Male, age 75, right hemisphere 6.1
2037 Male, age 80, right hemisphere 4.9
1818 Male, age 74, unknown 3.0
2778 Female, age 91, both hemispheres 2.4
2566 Female, age 72, unknown 2.0
2111 Female, age 85, right hemisphere 1.5
Nucleus accumbens
nTPM: 9.2
1856 Female, age 91, right hemisphere 13.9
1783 Male, age 74, unknown 12.5
2698 Female, age 72, unknown 12.5
1806 Female, age 85, left hemisphere 12.0
2824 Male, age 61, right hemisphere 10.6
2391 Female, age 94, left hemisphere 7.5
2732 Male, age 80, right hemisphere 2.9
2305 Male, age 75, left hemisphere 2.1
Nucleus basalis of Meynert
nTPM: 5.8
2842 Male, age 74, unknown 13.3
2569 Male, age 61, both hemispheres 7.9
2484 Female, age 94, left hemisphere 6.5
2200 Female, age 91, left hemisphere 4.9
2821 Male, age 75, both hemispheres 3.7
2393 Male, age 80, right hemisphere 3.6
2300 Female, age 85, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 11.3
2775 Male, age 80, right hemisphere 15.5
2195 Female, age 85, both hemispheres 15.3
1812 Female, age 91, both hemispheres 11.2
2029 Male, age 61, right hemisphere 11.2
1979 Male, age 74, unknown 3.1
Olfactory tubercle
nTPM: 10.9
1846 Male, age 80, right hemisphere 13.2
2856 Male, age 75, right hemisphere 11.0
2487 Female, age 94, left hemisphere 10.2
1998 Female, age 91, both hemispheres 9.2
Putamen
nTPM: 6.3
1838 Male, age 80, right hemisphere 9.9
2482 Female, age 94, left hemisphere 9.9
2490 Male, age 61, left hemisphere 9.0
1937 Female, age 91, right hemisphere 7.7
1829 Male, age 74, unknown 6.5
2466 Female, age 79, unknown 4.9
2489 Female, age 72, unknown 4.3
2647 Male, age 75, left hemisphere 4.0
2488 Female, age 85, left hemisphere 0.8
Septal nuclei
nTPM: 10.2
2031 Female, age 72, unknown 15.0
1960 Male, age 74, unknown 12.9
2629 Female, age 94, right hemisphere 11.8
2059 Female, age 85, both hemispheres 11.7
2009 Female, age 91, both hemispheres 9.5
2394 Male, age 61, left hemisphere 5.8
2199 Male, age 80, right hemisphere 4.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.4
Samples: 246

Max nTPM: 56.1
Min nTPM: 4.1
Std nTPM: 5.4
Median nTPM: 11.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 29.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 27.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 26.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 25.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 24.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 22.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 22.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 22.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 22.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 21.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 27.9
Min nTPM: 3.9
Std nTPM: 4.3
Median nTPM: 12.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 27.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 27.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 26.3
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 25.9
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 24.5
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 24.2
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 23.1
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 22.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 22.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 21.7
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 21.2
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Brain - Putamen (basal ganglia)
Average nTPM: 9.5
Samples: 205

Max nTPM: 19.1
Min nTPM: 3.4
Std nTPM: 3.1
Median nTPM: 9.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 19.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 18.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 17.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 16.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 16.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 15.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 15.9
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 15.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 15.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 15.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 15.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.3
FF:10164-103B2 76 years, female 47.3
Nucleus accumbens
Scaled Tags Per Million: 70.8
FF:10037-101F1 23-56 years, mixed 70.8
Putamen
Scaled Tags Per Million: 70.2
FF:10176-103C5 60 years, female 70.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Caudate
nTPM: 26.7
Samples: 4

Max nTPM: 28.3
Min nTPM: 23.4
Sample A Female 23.4
Sample B Female 28.3
Sample C Male 27.5
Sample D Male 27.5
Putamen
nTPM: 26.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.2
Sample A Female 28.2
Sample B Female 23.2
Sample C Male 28.4
Sample D Male 26.8
Septum
nTPM: 22.0
Samples: 4

Max nTPM: 26.8
Min nTPM: 17.6
Sample A Female 26.8
Sample B Female 20.8
Sample C Male 17.6
Sample D Male 22.7
Ventral pallidum
nTPM: 23.0
Samples: 4

Max nTPM: 25.5
Min nTPM: 16.7
Sample A Female 24.4
Sample B Female 16.7
Sample C Male 25.5
Sample D Male 25.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.8
Samples: 4

Max nTPM: 35.9
Min nTPM: 29.2
Sample A Male 30.0
Sample B Male 29.2
Sample C Female 31.9
Sample D Female 35.9
Septum
nTPM: 20.7
Samples: 4

Max nTPM: 21.4
Min nTPM: 20.4
Sample A Male 20.6
Sample B Male 20.4
Sample C Female 21.4
Sample D Female 20.4
Ventral forebrain
nTPM: 20.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.1
Sample A Male 20.6
Sample B Male 18.1
Sample C Female 19.1
Sample D Female 24.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 2.1
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.5
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 0.4
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 1.3
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 2.7
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.7
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 0.6
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.