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VPS41
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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:28.3 nTPM
GTEx:28.3 nTPM
FANTOM5:74.8 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:96.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 28.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 28.3
Samples: 105

Max nTPM: 53.3
Min nTPM: 13.0
Std nTPM: 7.9
Median nTPM: 0.0
308_1 70 years, female 53.3
414_1 84 years, female 51.3
491_1 89 years, female 50.1
490_1 67 years, female 48.7
413_1 59 years, female 45.4
495_1 57 years, female 44.9
501_1 88 years, male 44.1
466_1 57 years, female 43.4
89_1 63 years, male 43.1
149_1 88 years, male 42.1
347_1 72 years, male 41.9
119_1 70 years, female 39.8
324_1 76 years, male 36.8
32_1 67 years, male 36.6
315_1 62 years, female 35.8
468_1 89 years, male 34.5
9_1 66 years, female 33.7
406_1 79 years, male 33.6
254_1 77 years, female 33.5
425_1 59 years, female 33.5
526_1 61 years, male 33.3
41_1 94 years, female 33.2
126_1 63 years, male 33.0
142_1 61 years, female 31.8
120_1 70 years, female 31.1
162_1 79 years, female 30.8
117_1 61 years, male 30.5
145_1 84 years, male 30.5
217_1 76 years, male 30.5
265_1 87 years, male 30.4
189_1 76 years, male 30.3
139_1 64 years, female 29.9
348_1 84 years, male 29.9
42_1 85 years, male 29.7
137_1 83 years, male 29.7
415_1 77 years, female 29.6
99_1 64 years, male 29.5
311_1 78 years, male 29.5
349_1 83 years, male 29.5
452_1 88 years, female 29.5
291_1 76 years, male 29.4
396_1 62 years, male 29.4
503_1 68 years, male 29.4
321_1 62 years, female 29.0
173_1 67 years, male 28.7
499_1 55 years, female 28.7
518_1 75 years, female 28.7
115_1 83 years, male 28.1
81_1 67 years, male 28.0
229_1 69 years, female 28.0
517_1 88 years, male 28.0
18_1 88 years, male 27.8
177_1 74 years, male 27.7
317_1 60 years, male 27.3
109_1 81 years, female 27.2
384_1 83 years, male 26.8
351_1 91 years, male 26.7
506_1 65 years, male 26.3
320_1 89 years, female 26.2
386_1 76 years, male 26.2
447_1 81 years, male 26.1
379_1 60 years, male 25.6
307_1 66 years, female 25.3
405_1 91 years, male 25.3
246_1 77 years, male 24.9
314_1 67 years, male 24.9
355_1 70 years, female 24.9
286_1 68 years, female 24.8
335_1 73 years, female 24.8
288_1 66 years, female 24.5
172_1 72 years, female 24.3
292_1 71 years, male 24.1
389_1 86 years, female 24.1
295_1 61 years, female 24.0
350_1 84 years, female 24.0
375_1 74 years, female 24.0
6_1 73 years, female 23.8
264_1 73 years, female 23.6
35_1 74 years, female 23.4
43_1 64 years, female 23.4
163_1 78 years, male 23.4
266_1 85 years, male 22.9
243_1 75 years, male 22.7
318_1 68 years, male 22.7
376_1 75 years, female 22.7
394_1 75 years, female 22.7
313_1 79 years, female 22.1
480_1 63 years, male 21.2
153_1 70 years, female 21.0
251_1 78 years, male 20.8
404_1 82 years, female 20.7
354_1 81 years, female 20.5
353_1 82 years, female 20.3
237_1 82 years, male 19.4
17_1 71 years, male 19.1
322_1 76 years, male 18.8
4_1 88 years, female 18.6
293_1 68 years, female 18.6
352_1 62 years, male 18.6
316_1 62 years, male 17.7
319_1 81 years, male 17.5
356_1 87 years, female 16.2
2_1 77 years, female 15.3
377_1 82 years, female 14.3
218_1 71 years, female 13.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 74.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 74.8
FF:10030-101E3 24-65 years, mixed 74.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 29.1
Pig sample Sample description nTPM
Retina
nTPM: 29.1
Samples: 4

Max nTPM: 34.4
Min nTPM: 24.1
Sample A Female 24.1
Sample B Female 34.4
Sample C Male 29.3
Sample D Male 28.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 96.9
Mouse sample Sample description nTPM
Retina
nTPM: 97.0
Samples: 4

Max nTPM: 108.7
Min nTPM: 84.0
Sample A Male 108.7
Sample B Male 91.1
Sample C Female 84.0
Sample D Female 104.0

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by the Knut & Alice Wallenberg Foundation.