MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.3 nTPM
HPA Brain:55.1 nTPM
GTEx:77.3 nTPM
FANTOM5:360.4 Scaled Tags Per Million
Pig:54.6 nTPM
Mouse:50.0 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.5
2411 Female, age 72, unknown 55.7
1870 Female, age 42, unknown 54.1
1830 Male, age 51, unknown 53.6
1833 Male, age 53, unknown 51.3
2019 Male, age 18, unknown 51.3
2666 Male, age 74, left hemisphere 42.1
2828 Female, age 72, unknown 41.5
1827 Male, age 72, unknown 35.6
2586 Male, age 75, left hemisphere 33.7
2219 Male, age 76, both hemispheres 25.7
Dorsal raphe nucleus
nTPM: 35.1
2750 Male, age 76, both hemispheres 56.3
2016 Female, age 72, unknown 35.2
1828 Male, age 53, unknown 34.0
2047 Male, age 72, unknown 25.8
2298 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 31.6
1848 Female, age 42, unknown 33.4
1890 Male, age 53, unknown 32.7
2097 Female, age 72, unknown 30.1
2849 Male, age 72, unknown 29.9
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Periaquaductal grey, anterior
nTPM: 31.4
2502 Female, age 75, unknown 37.8
1947 Male, age 18, unknown 32.3
1795 Male, age 51, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 28.7
2464 Female, age 72, unknown 38.0
1831 Male, age 72, unknown 29.4
2850 Male, age 76, both hemispheres 26.3
1840 Male, age 53, unknown 21.2
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 31.7
2272 Male, age 74, both hemispheres 25.4
2140 Male, age 76, both hemispheres 24.8
Pretectal area
nTPM: 33.9
1815 Male, age 53, unknown 43.3
2316 Male, age 76, right hemisphere 40.6
2667 Female, age 75, unknown 39.3
1817 Female, age 42, unknown 38.3
2007 Male, age 72, unknown 36.0
2825 Male, age 18, unknown 32.0
1944 Female, age 72, unknown 30.1
2407 Male, age 75, both hemispheres 30.0
2273 Male, age 74, both hemispheres 28.2
1816 Male, age 51, unknown 27.9
2224 Female, age 72, unknown 26.9
Red nucleus
nTPM: 55.1
1865 Male, age 51, unknown 69.9
1821 Female, age 72, unknown 68.2
1904 Male, age 53, unknown 65.2
1954 Female, age 42, unknown 58.2
2769 Male, age 72, unknown 56.0
2823 Male, age 76, right hemisphere 55.7
2227 Male, age 72, unknown 55.4
2503 Female, age 72, unknown 55.4
2785 Male, age 18, unknown 54.3
2588 Male, age 74, left hemisphere 50.8
2725 Female, age 75, unknown 36.1
2584 Male, age 75, left hemisphere 35.4
Substantia nigra
nTPM: 37.0
2409 Female, age 72, unknown 47.6
1851 Male, age 51, unknown 40.9
1889 Female, age 72, unknown 39.4
2590 Female, age 75, unknown 39.2
2665 Male, age 74, both hemispheres 38.7
2583 Male, age 75, right hemisphere 36.8
2241 Male, age 72, unknown 35.6
2699 Male, age 18, unknown 33.6
1941 Male, age 53, unknown 29.6
1916 Female, age 42, unknown 28.5
Superior colliculus
nTPM: 38.8
1913 Female, age 42, unknown 57.2
1995 Male, age 72, unknown 53.7
2587 Male, age 74, left hemisphere 42.4
1895 Male, age 76, right hemisphere 39.5
1839 Male, age 51, unknown 38.4
2668 Female, age 75, unknown 36.9
2087 Female, age 72, unknown 31.2
1796 Male, age 53, unknown 30.5
2261 Male, age 18, unknown 29.6
2664 Male, age 75, both hemispheres 28.6
Ventral tegmental area
nTPM: 40.1
2223 Female, age 72, unknown 50.8
2410 Female, age 72, unknown 49.4
2021 Male, age 53, unknown 40.7
1915 Female, age 42, unknown 33.4
2218 Male, age 76, both hemispheres 33.3
1942 Male, age 51, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.3
Samples: 139

Max nTPM: 193.9
Min nTPM: 31.7
Std nTPM: 33.1
Median nTPM: 67.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 193.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 182.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 175.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 165.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 163.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 160.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 158.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 152.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 138.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 138.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 135.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 360.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 360.4
FF:10158-103A5 76 years, female 360.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 73.9
Min nTPM: 45.1
Sample A Female 45.1
Sample B Female 46.2
Sample C Male 47.6
Sample D Male 73.9
Midbrain
nTPM: 54.6
Samples: 4

Max nTPM: 108.3
Min nTPM: 35.2
Sample A Female 108.3
Sample B Female 36.6
Sample C Male 38.2
Sample D Male 35.2
Periaqueductal gray
nTPM: 35.0
Samples: 3

Max nTPM: 36.0
Min nTPM: 33.0
Sample B Female 33.0
Sample C Male 36.0
Sample D Male 35.9
Superior colliculi
nTPM: 41.5
Samples: 4

Max nTPM: 49.1
Min nTPM: 33.2
Sample A Female 39.6
Sample B Female 33.2
Sample C Male 44.1
Sample D Male 49.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 62.0
Min nTPM: 43.2
Sample A Male 43.2
Sample B Male 44.3
Sample C Female 62.0
Sample D Female 50.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69549165 Antisense, RP_050113_02_H12, Mouse strain C57BL/6J (56 days, male) 1.4

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