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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA:46.9 nTPM
GTEx:79.5 nTPM
FANTOM5:362.5 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:50.0 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.6
2411 Female, age 72, unknown 47.1
1870 Female, age 42, unknown 46.6
1830 Male, age 51, unknown 46.1
1833 Male, age 53, unknown 44.9
2019 Male, age 18, unknown 44.6
2666 Male, age 74, left hemisphere 40.3
2828 Female, age 72, unknown 40.2
1827 Male, age 72, unknown 37.4
2586 Male, age 75, left hemisphere 36.1
2219 Male, age 76, both hemispheres 33.0
Dorsal raphe nucleus
nTPM: 37.0
2750 Male, age 76, both hemispheres 47.3
2016 Female, age 72, unknown 36.9
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 32.7
2298 Female, age 72, unknown 31.7
Inferior colliculus
nTPM: 35.7
1848 Female, age 42, unknown 36.7
1890 Male, age 53, unknown 36.2
2097 Female, age 72, unknown 34.9
2849 Male, age 72, unknown 34.9
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Pedunculopontine tegmental nucleus
nTPM: 38.1
2334 Male, age 80, both hemispheres 39.9
1921 Female, age 85, both hemispheres 37.6
2338 Male, age 61, both hemispheres 36.6
Periaquaductal grey, anterior
nTPM: 35.2
2502 Female, age 75, unknown 38.1
1947 Male, age 18, unknown 35.7
1795 Male, age 51, unknown 31.9
Periaquaductal grey, dorsal
nTPM: 34.2
2464 Female, age 72, unknown 38.7
1831 Male, age 72, unknown 34.6
2850 Male, age 76, both hemispheres 32.9
1840 Male, age 53, unknown 30.6
Periaquaductal grey, lateral
nTPM: 33.5
2053 Male, age 18, unknown 35.7
2272 Male, age 74, both hemispheres 32.6
2140 Male, age 76, both hemispheres 32.1
Pretectal area
nTPM: 36.6
1815 Male, age 53, unknown 41.0
2316 Male, age 76, right hemisphere 39.7
2667 Female, age 75, unknown 39.3
1817 Female, age 42, unknown 38.6
2007 Male, age 72, unknown 37.3
2825 Male, age 18, unknown 35.9
1944 Female, age 72, unknown 34.9
2407 Male, age 75, both hemispheres 34.9
2273 Male, age 74, both hemispheres 33.8
1816 Male, age 51, unknown 33.7
2224 Female, age 72, unknown 33.2
Red nucleus
nTPM: 46.9
1865 Male, age 51, unknown 53.7
1821 Female, age 72, unknown 52.9
1904 Male, age 53, unknown 51.6
1954 Female, age 42, unknown 48.8
2769 Male, age 72, unknown 47.4
2227 Male, age 72, unknown 47.3
2823 Male, age 76, right hemisphere 47.3
2503 Female, age 72, unknown 47.2
2785 Male, age 18, unknown 46.3
2588 Male, age 74, left hemisphere 44.9
2725 Female, age 75, unknown 37.8
2584 Male, age 75, left hemisphere 37.3
Substantia nigra
nTPM: 37.9
2409 Female, age 72, unknown 42.8
1851 Male, age 51, unknown 39.6
2590 Female, age 75, unknown 39.3
1889 Female, age 72, unknown 39.2
2665 Male, age 74, both hemispheres 38.6
2583 Male, age 75, right hemisphere 38.1
2241 Male, age 72, unknown 36.9
2699 Male, age 18, unknown 36.4
1941 Male, age 53, unknown 34.4
1916 Female, age 42, unknown 33.5
Superior colliculus
nTPM: 39.0
1913 Female, age 42, unknown 47.9
1995 Male, age 72, unknown 46.4
2587 Male, age 74, left hemisphere 40.8
1895 Male, age 76, right hemisphere 39.8
1839 Male, age 51, unknown 38.9
2668 Female, age 75, unknown 37.7
2087 Female, age 72, unknown 35.5
1796 Male, age 53, unknown 35.1
2261 Male, age 18, unknown 34.4
2664 Male, age 75, both hemispheres 33.9
Ventral tegmental area
nTPM: 39.6
2223 Female, age 72, unknown 44.6
2410 Female, age 72, unknown 44.0
2021 Male, age 53, unknown 39.8
1915 Female, age 42, unknown 36.4
2218 Male, age 76, both hemispheres 36.4
1942 Male, age 51, unknown 36.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.5
Samples: 139

Max nTPM: 200.9
Min nTPM: 32.8
Std nTPM: 34.2
Median nTPM: 69.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 200.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 187.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 181.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 170.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 169.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 165.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 163.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 156.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 143.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 142.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 139.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 362.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 362.5
FF:10158-103A5 76 years, female 362.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.9
Pig sample Sample description nTPM
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 83.6
Min nTPM: 27.0
Sample A Female 83.6
Sample B Female 27.9
Sample C Male 29.1
Sample D Male 27.0
Periaqueductal gray
nTPM: 26.5
Samples: 3

Max nTPM: 27.4
Min nTPM: 25.0
Sample B Female 25.0
Sample C Male 27.4
Sample D Male 27.0
Substantia nigra
nTPM: 40.6
Samples: 4

Max nTPM: 55.8
Min nTPM: 35.0
Sample A Female 35.0
Sample B Female 35.0
Sample C Male 36.5
Sample D Male 55.8
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 37.8
Min nTPM: 25.1
Sample A Female 30.7
Sample B Female 25.1
Sample C Male 33.9
Sample D Male 37.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 62.0
Min nTPM: 43.2
Sample A Male 43.2
Sample B Male 44.3
Sample C Female 62.0
Sample D Female 50.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69549165 Antisense, RP_050113_02_H12, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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