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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:10.7 nTPM
HPA Brain:28.6 nTPM
GTEx:10.7 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:21.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 28.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 26.5
2565 Male, age 75, midline 33.7
2194 Female, age 79, both hemispheres 28.1
2816 Male, age 47, midline 25.6
1981 Female, age 72, midline 23.5
2048 Male, age 55, midline 21.5
Cervical spinal cord, dorsal horn
nTPM: 24.8
2721 Male, age 90, both hemispheres 30.3
1877 Male, age 55, unknown 28.9
2297 Male, age 75, both hemispheres 27.7
2069 Male, age 47, both hemispheres 23.6
2173 Female, age 72, unknown 19.6
2296 Male, age 66, both hemispheres 18.9
Cervical spinal cord, ventral horn
nTPM: 28.6
2480 Male, age 75, both hemispheres 34.5
2820 Female, age 79, both hemispheres 30.0
2809 Male, age 90, both hemispheres 29.3
2068 Male, age 55, unknown 29.0
2295 Male, age 66, both hemispheres 28.0
2098 Female, age 72, unknown 21.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 10.7
Samples: 159

Max nTPM: 19.0
Min nTPM: 6.1
Std nTPM: 2.2
Median nTPM: 10.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 19.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 18.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 18.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 16.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 16.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 15.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 15.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 15.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 14.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 14.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 14.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 14.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 13.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 13.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 13.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 13.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 12.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 12.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 12.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 12.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 12.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 12.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 12.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 12.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 12.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 12.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 12.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 12.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 12.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 12.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 12.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 12.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 12.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 12.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 12.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 12.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 12.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 11.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 11.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 11.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 11.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 11.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 11.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 11.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 11.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 11.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 11.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 11.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 11.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 11.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 11.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 11.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 11.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 11.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 11.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 11.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 11.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 11.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 10.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 10.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 10.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 10.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 10.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 10.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 10.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 10.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 10.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 10.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 10.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 10.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 10.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 10.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 10.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 10.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 10.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 10.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 10.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 10.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 10.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 10.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 10.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 10.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 10.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 10.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 10.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 10.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 10.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 10.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 10.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 10.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 10.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 10.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 9.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 9.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 9.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 9.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 9.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 9.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 9.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 9.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 9.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 9.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 9.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 9.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 9.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 9.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 9.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 9.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 9.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 9.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 9.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 9.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 9.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 9.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 9.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 9.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 9.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 9.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 9.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 9.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 9.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 9.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 9.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 9.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 8.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 8.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 8.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 8.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 8.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 8.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 8.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 8.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 8.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 8.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 8.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 8.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 8.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 8.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 8.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 8.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 8.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 8.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 8.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 7.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 7.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 7.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 7.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 7.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 7.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 7.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 6.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 6.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 34.8
FF:10181-103D1 60 years, female 40.6
FF:10159-103A6 76 years, female 29.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 21.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 19.0
Samples: 4

Max nTPM: 24.3
Min nTPM: 15.1
Sample A Female 24.3
Sample B Female 15.4
Sample C Male 15.1
Sample D Male 21.0
Ventral spinal cord
nTPM: 21.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 19.9
Sample A Female 25.3
Sample B Female 19.9
Sample C Male 21.6
Sample D Male 19.9

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