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PAFAH1B1
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  • PAFAH1B1
TISSUE PRIMARY DATA THALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:36.7 nTPM
HPA:36.7 nTPM
FANTOM5:136.5 Scaled Tags Per Million
Pig:147.2 nTPM
Mouse:184.4 nTPM
Allen mouse:10.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 25.3
2032 Female, age 42, unknown 32.2
2497 Male, age 66, unknown 28.4
2396 Male, age 61, right hemisphere 15.4
Centromedial thalamic nucleus
nTPM: 23.6
2401 Male, age 76, right hemisphere 41.5
2279 Female, age 85, left hemisphere 5.7
Habenula
nTPM: 36.4
1957 Male, age 80, both hemispheres 52.1
2203 Male, age 61, left hemisphere 49.8
2252 Male, age 62, unknown 22.4
2276 Male, age 66, unknown 21.1
Lateral geniculate body
nTPM: 36.7
1953 Male, age 62, unknown 53.3
2106 Female, age 67, right hemisphere 49.4
2399 Male, age 61, left hemisphere 39.5
2035 Female, age 72, unknown 37.6
2857 Male, age 74, right hemisphere 32.4
2575 Female, age 94, right hemisphere 30.5
2659 Male, age 66, unknown 29.2
2841 Male, age 80, both hemispheres 21.7
Lateral thalamic nuclei
nTPM: 29.7
2765 Female, age 67, both hemispheres 38.1
1903 Male, age 76, left hemisphere 33.6
2577 Male, age 74, both hemispheres 30.9
2573 Female, age 94, left hemisphere 26.5
2661 Female, age 72, unknown 19.2
Medial dorsal thalamic nucleus
nTPM: 32.3
2498 Male, age 66, unknown 40.2
1859 Male, age 76, both hemispheres 40.0
1971 Male, age 61, right hemisphere 38.5
1810 Male, age 48, unknown 34.9
2026 Male, age 62, unknown 34.8
2492 Male, age 75, right hemisphere 33.3
2576 Male, age 74, both hemispheres 33.3
2572 Female, age 94, right hemisphere 32.2
2283 Male, age 80, right hemisphere 30.3
1930 Female, age 42, unknown 29.0
2039 Female, age 72, unknown 27.0
2402 Female, age 67, both hemispheres 25.2
2660 Female, age 72, unknown 21.1
Medial geniculate body
nTPM: 30.8
1811 Female, age 42, unknown 46.7
2571 Male, age 75, right hemisphere 41.6
2657 Male, age 74, right hemisphere 30.1
2650 Female, age 94, left hemisphere 28.5
2207 Male, age 80, right hemisphere 25.2
2217 Female, age 72, unknown 24.2
2049 Male, age 76, both hemispheres 19.6
Nucleus reuniens
nTPM: 25.1
2212 Female, age 67, left hemisphere 35.8
2205 Male, age 80, left hemisphere 23.0
2210 Female, age 85, left hemisphere 16.4
Nucleus rhomboideus
nTPM: 21.4
2206 Male, age 80, both hemispheres 37.4
2280 Female, age 85, left hemisphere 14.3
2213 Female, age 67, left hemisphere 12.4
Posterior thalamic nucleus
nTPM: 30.7
2649 Female, age 94, both hemispheres 38.1
2655 Male, age 74, right hemisphere 36.6
2266 Male, age 76, right hemisphere 24.5
2495 Female, age 67, right hemisphere 23.5
Pulvinar
nTPM: 34.3
1972 Male, age 62, unknown 47.5
2398 Male, age 61, left hemisphere 36.9
1932 Male, age 80, right hemisphere 36.4
1929 Male, age 48, unknown 35.9
2724 Male, age 74, right hemisphere 35.6
1899 Female, age 42, unknown 34.0
2499 Male, age 66, unknown 31.3
2496 Female, age 67, right hemisphere 30.9
2214 Male, age 76, right hemisphere 30.4
2582 Female, age 72, unknown 24.3
Subthalamic nucleus
nTPM: 28.2
2406 Female, age 72, unknown 39.9
2658 Male, age 74, both hemispheres 37.2
2275 Male, age 66, unknown 31.5
2124 Male, age 62, unknown 30.9
2282 Male, age 61, both hemispheres 29.4
2779 Female, age 42, unknown 23.6
2056 Female, age 72, unknown 18.4
2216 Male, age 48, unknown 14.7
Ventral posterolateral thalamic nucleus
nTPM: 31.3
2740 Male, age 76, right hemisphere 40.0
2197 Male, age 80, both hemispheres 33.9
2570 Male, age 75, right hemisphere 32.9
2578 Male, age 74, both hemispheres 32.5
2397 Male, age 61, right hemisphere 29.8
2581 Female, age 72, unknown 18.5
Ventral posteromedial thalamic nucleus
nTPM: 32.5
2202 Male, age 61, left hemisphere 39.4
2653 Male, age 74, both hemispheres 37.8
2281 Male, age 75, right hemisphere 31.3
2758 Male, age 80, both hemispheres 31.1
2127 Male, age 76, right hemisphere 23.0
Ventral thalamic nuclei
nTPM: 31.9
1860 Male, age 76, both hemispheres 44.3
1845 Male, age 48, unknown 44.0
2652 Male, age 74, left hemisphere 36.1
2580 Male, age 66, unknown 32.9
1912 Female, age 42, unknown 32.2
2285 Male, age 62, unknown 28.9
2858 Female, age 72, unknown 24.5
2204 Male, age 80, both hemispheres 22.4
2291 Female, age 72, unknown 21.6
Ventromedial nucleus
nTPM: 34.6
1982 Female, age 72, unknown 41.5
1822 Female, age 42, unknown 27.7
Zona incerta
nTPM: 26.5
2215 Male, age 66, unknown 35.0
2822 Male, age 74, right hemisphere 30.1
2208 Male, age 80, right hemisphere 24.7
2403 Male, age 62, unknown 22.7
2663 Female, age 72, unknown 20.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 136.5
FF:10154-103A1 76 years, female 136.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.2
Pig sample Sample description nTPM
Thalamus
nTPM: 147.2
Samples: 4

Max nTPM: 192.8
Min nTPM: 103.7
Sample A Female 192.8
Sample B Female 112.6
Sample C Male 179.7
Sample D Male 103.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 184.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 184.4
Samples: 4

Max nTPM: 209.2
Min nTPM: 162.9
Sample A Male 169.8
Sample B Male 209.2
Sample C Female 162.9
Sample D Female 195.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 10.7
2460 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 21.5
2461 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 20.4
71765004 Antisense, RP_050926_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.