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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:36.6 nTPM
GTEx:36.6 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:88.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 36.6
Samples: 105

Max nTPM: 58.8
Min nTPM: 21.6
Std nTPM: 7.5
Median nTPM: 0.0
490_1 67 years, female 58.8
149_1 88 years, male 57.7
413_1 59 years, female 57.4
466_1 57 years, female 54.9
495_1 57 years, female 52.4
491_1 89 years, female 51.0
501_1 88 years, male 50.4
311_1 78 years, male 48.6
415_1 77 years, female 48.4
43_1 64 years, female 48.0
526_1 61 years, male 48.0
139_1 64 years, female 46.3
217_1 76 years, male 45.5
405_1 91 years, male 45.4
162_1 79 years, female 44.9
81_1 67 years, male 44.8
324_1 76 years, male 44.7
316_1 62 years, male 43.3
322_1 76 years, male 42.6
414_1 84 years, female 42.1
348_1 84 years, male 42.0
89_1 63 years, male 41.4
229_1 69 years, female 41.4
518_1 75 years, female 41.4
251_1 78 years, male 40.4
117_1 61 years, male 40.2
386_1 76 years, male 40.2
142_1 61 years, female 40.0
314_1 67 years, male 40.0
321_1 62 years, female 39.9
468_1 89 years, male 39.8
480_1 63 years, male 39.5
404_1 82 years, female 39.3
32_1 67 years, male 39.2
307_1 66 years, female 38.7
254_1 77 years, female 38.6
286_1 68 years, female 38.6
292_1 71 years, male 38.0
315_1 62 years, female 37.7
396_1 62 years, male 37.3
237_1 82 years, male 37.1
406_1 79 years, male 37.0
163_1 78 years, male 36.9
291_1 76 years, male 36.4
425_1 59 years, female 36.4
243_1 75 years, male 36.3
265_1 87 years, male 36.2
266_1 85 years, male 36.1
177_1 74 years, male 35.9
145_1 84 years, male 35.7
335_1 73 years, female 35.7
288_1 66 years, female 35.5
499_1 55 years, female 35.4
9_1 66 years, female 35.0
308_1 70 years, female 34.9
517_1 88 years, male 34.9
18_1 88 years, male 34.7
318_1 68 years, male 34.7
173_1 67 years, male 34.6
313_1 79 years, female 34.4
320_1 89 years, female 34.3
353_1 82 years, female 34.3
172_1 72 years, female 34.2
352_1 62 years, male 34.2
375_1 74 years, female 34.0
126_1 63 years, male 33.8
350_1 84 years, female 33.7
447_1 81 years, male 33.6
376_1 75 years, female 33.3
137_1 83 years, male 33.0
389_1 86 years, female 33.0
2_1 77 years, female 32.9
35_1 74 years, female 32.4
355_1 70 years, female 32.3
119_1 70 years, female 32.2
503_1 68 years, male 32.2
6_1 73 years, female 32.1
115_1 83 years, male 32.1
153_1 70 years, female 31.8
218_1 71 years, female 31.4
189_1 76 years, male 31.2
17_1 71 years, male 31.1
246_1 77 years, male 31.1
351_1 91 years, male 30.9
354_1 81 years, female 30.8
347_1 72 years, male 30.5
120_1 70 years, female 30.2
506_1 65 years, male 30.2
109_1 81 years, female 30.1
452_1 88 years, female 29.7
41_1 94 years, female 29.6
42_1 85 years, male 29.3
379_1 60 years, male 28.5
99_1 64 years, male 28.2
377_1 82 years, female 28.2
295_1 61 years, female 28.1
317_1 60 years, male 28.0
264_1 73 years, female 27.9
349_1 83 years, male 27.6
319_1 81 years, male 26.5
293_1 68 years, female 26.0
356_1 87 years, female 24.1
384_1 83 years, male 22.9
394_1 75 years, female 22.6
4_1 88 years, female 21.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 82.6
FF:10030-101E3 24-65 years, mixed 82.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.9
Pig sample Sample description nTPM
Retina
nTPM: 34.9
Samples: 4

Max nTPM: 37.1
Min nTPM: 32.5
Sample A Female 37.1
Sample B Female 32.5
Sample C Male 33.7
Sample D Male 36.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.3
Mouse sample Sample description nTPM
Retina
nTPM: 88.3
Samples: 4

Max nTPM: 104.3
Min nTPM: 70.6
Sample A Male 93.5
Sample B Male 84.7
Sample C Female 70.6
Sample D Female 104.3

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by the Knut & Alice Wallenberg Foundation.