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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.0 nTPM
HPA:21.0 nTPM
GTEx:16.5 nTPM
FANTOM5:82.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA040446
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 21.0
overview
Male, age 65
Small intestine sample 232
nTPM: 20.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 21.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 19.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 22.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 16.5
Samples: 187

Max nTPM: 28.9
Min nTPM: 9.2
Std nTPM: 4.3
Median nTPM: 16.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 28.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 27.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 27.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 25.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 25.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 24.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 24.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 24.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 24.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 24.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 23.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 23.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 23.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 23.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 23.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 23.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 22.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 22.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 22.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 22.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 22.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 22.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 21.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 21.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 21.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 21.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 21.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 21.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 21.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 21.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 21.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 20.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 20.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 20.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 20.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 20.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 20.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 20.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 19.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 19.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 19.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 19.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 19.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 19.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 19.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 19.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 19.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 19.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 19.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 19.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 19.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 19.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 19.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 19.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 18.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 18.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 18.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 18.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 18.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 18.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 18.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 18.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 18.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 18.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 18.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 18.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 17.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 17.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 17.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 17.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 17.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 17.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 17.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 17.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 17.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 17.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 17.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 17.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 17.1
GTEX-1192X-2526-SM-59868 50-59 years, male 17.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 17.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 17.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 16.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 16.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 16.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 16.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 16.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 16.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 16.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 16.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 16.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 16.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 16.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 16.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 16.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 16.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 16.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 15.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 15.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 15.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 15.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 15.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 15.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 15.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 15.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 15.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 15.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 15.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 15.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 15.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 14.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 14.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 14.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 14.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 14.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 14.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 14.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 14.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 14.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 14.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 14.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 14.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 14.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 14.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 13.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 13.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 13.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 13.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 13.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 13.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 13.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 13.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 13.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 13.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 13.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 13.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 13.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 13.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 12.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 12.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 12.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 12.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 12.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 12.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 12.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 12.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 12.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 12.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 12.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 12.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 12.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 12.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 12.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 11.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 11.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 11.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 11.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 11.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 11.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 11.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 11.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 11.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 11.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 11.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 10.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 10.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 10.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 10.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 10.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 10.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 10.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 10.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 10.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 10.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 10.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 10.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 10.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 9.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 9.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 9.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 9.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 9.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 9.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 9.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 82.5
FF:10024-101D6 15,40,85 years, mixed 82.5

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