BRCA1

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:4.4 FPKM
GTEx:1.0 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA034966

 

Antibody CAB001946

 

Antibody CAB018369

 

Endothelial cells

Medium   Low   Medium  

Glandular cells

High   High   High  

Peripheral nerve/ganglion

Low   Low   Medium  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

4.4

overview Male, age 54
Sample 1
FPKM: 2.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 5.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 6.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 1.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 3.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 2.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 7.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

1.0

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 0.9
Samples: 149

Max RPKM: 1.8
Min RPKM: 0.1
Std RPKM: 0.3
Median RPKM: 0.9
GTEX-146FH-2426-SM-5Q5EW 1.8
GTEX-13CF2-1826-SM-5N9GK 1.7
GTEX-147GR-2826-SM-5RQK8 1.7
GTEX-1399R-2126-SM-5K7WZ 1.6
GTEX-ZYY3-2226-SM-5E45A 1.6
GTEX-XQ8I-2326-SM-4BOQC 1.6
GTEX-ZF28-2526-SM-57WFH 1.6
GTEX-13N2G-2226-SM-5IJCU 1.5
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 1.0
Samples: 196

Max RPKM: 3.5
Min RPKM: 0.1
Std RPKM: 0.5
Median RPKM: 0.9
GTEX-144GN-1126-SM-5LU33 3.5
GTEX-PWOO-1326-SM-48TCJ 3.0
GTEX-R53T-1326-SM-48FCQ 2.9
GTEX-11TT1-1026-SM-5PNW7 2.8
GTEX-1128S-1626-SM-5H12O 2.5
GTEX-QDVN-1326-SM-48TZ3 2.4
GTEX-P78B-1726-SM-3P5ZV 2.2
GTEX-146FQ-1926-SM-5NQBY 2.2
Show all