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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:51.8 nTPM
FANTOM5:75.7 Scaled Tags Per Million
Pig:34.7 nTPM
Allen mouse:4.5 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 51.8
Sample id Sample description nTPM
Area postrema
nTPM: 43.2
2054 Male, age 76, both hemispheres 47.0
2306 Male, age 80, both hemispheres 42.7
2799 Male, age 61, both hemispheres 40.0
Dorsal medullary reticular nucleus
nTPM: 43.7
2040 Female, age 85, both hemispheres 47.7
2088 Male, age 76, both hemispheres 44.1
2373 Male, age 61, both hemispheres 39.4
Dorsal motor vagal complex
nTPM: 47.4
2133 Female, age 91, both hemispheres 55.4
2643 Male, age 74, both hemispheres 54.4
2807 Female, age 85, both hemispheres 47.6
2844 Male, age 55, unknown 46.5
2813 Female, age 72, unknown 45.8
2000 Male, age 74, unknown 44.5
2185 Male, age 76, both hemispheres 43.3
2797 Male, age 61, both hemispheres 41.5
Gigantocellular reticular nuclei, medullary
nTPM: 40.7
2462 Male, age 74, both hemispheres 46.4
2310 Male, age 80, both hemispheres 42.0
2387 Female, age 91, both hemispheres 41.4
2022 Male, age 76, right hemisphere 39.5
1876 Female, age 85, both hemispheres 38.9
2314 Male, age 61, both hemispheres 36.1
Gigantocellular reticular nuclei, pars
nTPM: 42.9
2168 Male, age 76, both hemispheres 50.3
2084 Female, age 85, both hemispheres 44.6
2336 Male, age 61, both hemispheres 40.9
2706 Male, age 80, both hemispheres 40.0
2330 Male, age 80, both hemispheres 38.6
Inferior olive
nTPM: 41.3
2628 Female, age 91, both hemispheres 44.3
2563 Male, age 74, both hemispheres 44.2
2379 Male, age 80, both hemispheres 41.2
2085 Female, age 85, both hemispheres 40.3
2178 Male, age 61, both hemispheres 36.5
Lateral medullary reticular nucleus
nTPM: 45.7
2044 Male, age 76, both hemispheres 53.3
2852 Male, age 80, both hemispheres 46.4
2305 Male, age 74, both hemispheres 45.5
2190 Female, age 85, both hemispheres 44.6
2804 Female, age 91, both hemispheres 42.5
2374 Male, age 61, both hemispheres 41.9
Medial olivary nucleus
nTPM: 41.0
2851 Male, age 80, both hemispheres 46.2
2138 Female, age 91, both hemispheres 43.0
1943 Male, age 61, both hemispheres 38.5
1962 Male, age 76, both hemispheres 36.2
Medial vestibular nucleus
nTPM: 47.0
2134 Male, age 76, both hemispheres 54.7
2624 Male, age 61, both hemispheres 50.8
2801 Male, age 74, both hemispheres 47.0
2743 Female, age 85, both hemispheres 45.3
2093 Male, age 80, both hemispheres 43.2
2803 Female, age 91, both hemispheres 41.1
Motor hypoglossal nucleus
nTPM: 47.8
2461 Male, age 61, both hemispheres 50.7
2182 Male, age 80, both hemispheres 48.6
2125 Female, age 91, both hemispheres 47.5
2132 Female, age 85, both hemispheres 46.2
2277 Male, age 76, both hemispheres 46.2
Nucleus ambiguus
nTPM: 46.8
2096 Female, age 85, both hemispheres 53.7
2071 Male, age 76, both hemispheres 40.0
Nucleus cuneatus
nTPM: 41.1
2131 Male, age 76, both hemispheres 48.5
2564 Male, age 74, both hemispheres 47.1
2562 Male, age 61, both hemispheres 42.0
2805 Female, age 91, both hemispheres 40.7
2808 Female, age 85, both hemispheres 39.8
2100 Male, age 76, both hemispheres 39.3
2381 Male, age 80, both hemispheres 38.5
2376 Male, age 61, both hemispheres 38.0
2380 Male, age 80, both hemispheres 36.4
Nucleus gracilis
nTPM: 43.9
2627 Male, age 74, both hemispheres 46.6
2299 Female, age 85, both hemispheres 44.1
2382 Male, age 80, both hemispheres 41.1
Nucleus raphe obscurus
nTPM: 36.3
2845 Female, age 85, midline 39.7
2800 Male, age 61, midline 36.5
2142 Male, age 76, midline 32.7
Nucleus raphe pallidus
nTPM: 45.0
2183 Male, age 80, midline 53.2
1924 Male, age 61, midline 46.4
2145 Male, age 76, midline 35.5
Nucleus tractus solitarii
nTPM: 47.6
2656 Male, age 76, both hemispheres 54.8
2191 Female, age 85, both hemispheres 52.3
2307 Male, age 80, both hemispheres 52.0
2144 Female, age 91, right hemisphere 31.2
Parvicellular reticular nuclei
nTPM: 44.4
2119 Male, age 80, both hemispheres 48.1
2558 Male, age 74, both hemispheres 43.4
2095 Male, age 76, both hemispheres 41.6
Parvicellular reticular nuclei, medullary
nTPM: 45.1
2189 Female, age 91, both hemispheres 51.4
2091 Female, age 85, both hemispheres 45.2
2181 Male, age 80, left hemisphere 38.8
Peritrigeminal nucleus
nTPM: 51.8
2067 Female, age 85, both hemispheres 56.0
2136 Male, age 76, both hemispheres 51.7
2179 Male, age 61, both hemispheres 47.6
Prepositus hypoglossal nucleus
nTPM: 45.0
2086 Male, age 80, both hemispheres 47.7
2855 Female, age 85, right hemisphere 42.3
Spinal trigeminal nucleus, caudal
nTPM: 44.0
2447 Male, age 76, both hemispheres 49.4
2390 Female, age 91, both hemispheres 47.9
2642 Male, age 74, both hemispheres 46.4
2308 Male, age 80, both hemispheres 41.3
2312 Male, age 61, both hemispheres 35.2
Spinal trigeminal nucleus, interpolar
nTPM: 50.4
2066 Male, age 76, right hemisphere 65.9
2625 Male, age 61, both hemispheres 51.4
2033 Male, age 80, both hemispheres 48.9
2389 Female, age 91, both hemispheres 43.7
2386 Female, age 85, both hemispheres 42.0
Spinal vestibular nucleus
nTPM: 44.0
2780 Male, age 80, both hemispheres 46.8
2748 Male, age 76, both hemispheres 45.4
2186 Female, age 91, both hemispheres 45.2
2384 Male, age 74, both hemispheres 43.8
2796 Male, age 61, both hemispheres 42.6
2806 Female, age 85, both hemispheres 40.1
Superior vestibular nucleus
nTPM: 43.7
2061 Male, age 76, both hemispheres 44.6
2015 Male, age 80, both hemispheres 43.5
2383 Male, age 74, both hemispheres 43.0
Ventral medullary reticular nucleus
nTPM: 44.3
2060 Male, age 76, both hemispheres 50.5
2372 Male, age 61, both hemispheres 38.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 48.1
2741 Female, age 85, both hemispheres 55.1
1986 Male, age 76, both hemispheres 55.0
2302 Female, age 91, both hemispheres 44.4
2118 Male, age 80, both hemispheres 44.1
2180 Male, age 61, both hemispheres 42.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 75.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 75.7
FF:10038-101F2 18-64 years, mixed 86.4
FF:10155-103A2 76 years, female 77.0
FF:10174-103C3 60 years, female 63.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 34.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 34.7
Samples: 4

Max nTPM: 39.7
Min nTPM: 32.3
Sample A Female 32.3
Sample B Female 33.3
Sample C Male 39.7
Sample D Male 33.3

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.5
576431 Antisense, RP_040826_01_H05, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.