We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ALOX5
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • ALOX5
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:35.8 nTPM
HPA:3.0 nTPM
GTEx:35.8 nTPM
FANTOM5:34.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA071285
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells Not detected
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 3.0
overview
Male, age 65
Small intestine sample 232
nTPM: 1.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 0.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 0.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 35.8
Samples: 187

Max nTPM: 154.6
Min nTPM: 3.6
Std nTPM: 23.8
Median nTPM: 29.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 154.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 123.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 96.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 95.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 85.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 79.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 79.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 78.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 76.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 75.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 73.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 72.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 72.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 72.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 72.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 71.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 70.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 69.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 66.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 66.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 64.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 64.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 63.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 62.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 62.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 62.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 61.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 61.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 59.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 59.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 59.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 58.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 58.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 58.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 57.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 57.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 57.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 57.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 57.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 56.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 56.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 56.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 55.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 55.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 54.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 54.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 54.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 53.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 53.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 53.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 52.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 52.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 51.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 50.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 47.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 46.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 44.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 43.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 43.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 43.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 42.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 41.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 41.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 40.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 40.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 40.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 40.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 39.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 39.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 39.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 38.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 37.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 37.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 37.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 37.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 36.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 35.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 35.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 35.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 34.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 34.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 34.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 32.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 32.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 32.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 31.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 31.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 31.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 31.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 31.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 30.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 30.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 30.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 29.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 29.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 29.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 29.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 29.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 28.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 28.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 28.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 28.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 27.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 26.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 26.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 25.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 25.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 24.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 24.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 24.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 24.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 24.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 24.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 23.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 22.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 22.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 22.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 22.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 22.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 22.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 22.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 21.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 21.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 21.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 21.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 21.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 20.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 20.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 19.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 19.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 19.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 19.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 19.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 19.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 18.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 18.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 18.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 17.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 17.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 17.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 17.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 17.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 16.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 16.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 15.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 15.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 15.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 15.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 15.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 14.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 14.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 14.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 14.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 14.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 14.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 13.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 13.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 13.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 13.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 13.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 12.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 12.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 11.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 11.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 11.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 11.0
GTEX-1192X-2526-SM-59868 50-59 years, male 10.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 10.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 10.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 9.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 9.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 9.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 9.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 9.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 9.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 9.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 9.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 8.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 8.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 8.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 7.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 7.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 5.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 3.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 34.8
FF:10024-101D6 15,40,85 years, mixed 34.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.