MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.0 nTPM
HPA Brain:73.7 nTPM
GTEx:86.0 nTPM
FANTOM5:151.3 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:53.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.8
2411 Female, age 72, unknown 76.2
2019 Male, age 18, unknown 73.3
1833 Male, age 53, unknown 63.4
1830 Male, age 51, unknown 63.1
1870 Female, age 42, unknown 63.0
2828 Female, age 72, unknown 56.1
2586 Male, age 75, left hemisphere 54.8
1827 Male, age 72, unknown 50.1
2666 Male, age 74, left hemisphere 45.1
2219 Male, age 76, both hemispheres 42.6
Dorsal raphe nucleus
nTPM: 52.9
2750 Male, age 76, both hemispheres 70.1
2016 Female, age 72, unknown 53.2
2298 Female, age 72, unknown 50.0
1828 Male, age 53, unknown 47.3
2047 Male, age 72, unknown 43.9
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 47.8
1890 Male, age 53, unknown 46.9
1848 Female, age 42, unknown 44.2
2849 Male, age 72, unknown 40.1
Median raphe nucleus
nTPM: 50.7
2220 Male, age 76, midline 50.7
Periaquaductal grey, anterior
nTPM: 48.6
2502 Female, age 75, unknown 56.1
1947 Male, age 18, unknown 45.5
1795 Male, age 51, unknown 44.3
Periaquaductal grey, dorsal
nTPM: 39.2
2464 Female, age 72, unknown 51.5
1831 Male, age 72, unknown 37.5
2850 Male, age 76, both hemispheres 36.5
1840 Male, age 53, unknown 31.3
Periaquaductal grey, lateral
nTPM: 48.1
2272 Male, age 74, both hemispheres 54.5
2140 Male, age 76, both hemispheres 45.6
2053 Male, age 18, unknown 44.2
Pretectal area
nTPM: 47.2
2316 Male, age 76, right hemisphere 55.7
2273 Male, age 74, both hemispheres 54.1
1815 Male, age 53, unknown 53.9
2007 Male, age 72, unknown 53.4
1817 Female, age 42, unknown 48.0
2407 Male, age 75, both hemispheres 46.3
2667 Female, age 75, unknown 44.4
2224 Female, age 72, unknown 44.2
2825 Male, age 18, unknown 44.2
1944 Female, age 72, unknown 38.4
1816 Male, age 51, unknown 36.5
Red nucleus
nTPM: 73.7
1904 Male, age 53, unknown 90.0
2769 Male, age 72, unknown 86.0
2227 Male, age 72, unknown 81.3
2785 Male, age 18, unknown 80.3
2503 Female, age 72, unknown 79.0
1865 Male, age 51, unknown 78.7
1954 Female, age 42, unknown 77.5
1821 Female, age 72, unknown 73.0
2823 Male, age 76, right hemisphere 71.2
2725 Female, age 75, unknown 57.6
2588 Male, age 74, left hemisphere 57.0
2584 Male, age 75, left hemisphere 52.6
Substantia nigra
nTPM: 46.7
2583 Male, age 75, right hemisphere 57.6
1851 Male, age 51, unknown 55.6
2590 Female, age 75, unknown 54.1
1916 Female, age 42, unknown 47.8
1889 Female, age 72, unknown 47.3
2409 Female, age 72, unknown 45.6
2699 Male, age 18, unknown 44.0
1941 Male, age 53, unknown 42.6
2665 Male, age 74, both hemispheres 37.8
2241 Male, age 72, unknown 34.3
Superior colliculus
nTPM: 52.2
1995 Male, age 72, unknown 71.6
1913 Female, age 42, unknown 67.7
1839 Male, age 51, unknown 54.0
1796 Male, age 53, unknown 52.9
2587 Male, age 74, left hemisphere 51.3
2668 Female, age 75, unknown 50.3
2261 Male, age 18, unknown 46.9
1895 Male, age 76, right hemisphere 43.5
2087 Female, age 72, unknown 43.1
2664 Male, age 75, both hemispheres 41.0
Ventral tegmental area
nTPM: 54.4
2410 Female, age 72, unknown 66.8
2223 Female, age 72, unknown 62.8
1915 Female, age 42, unknown 50.5
1942 Male, age 51, unknown 50.4
2218 Male, age 76, both hemispheres 49.4
2021 Male, age 53, unknown 46.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.0
Samples: 139

Max nTPM: 193.4
Min nTPM: 43.5
Std nTPM: 25.5
Median nTPM: 80.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 193.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 176.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 161.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 159.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 151.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 143.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 141.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 131.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 131.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 125.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.3
FF:10158-103A5 76 years, female 151.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.8
Samples: 4

Max nTPM: 61.6
Min nTPM: 43.8
Sample A Female 61.6
Sample B Female 43.8
Sample C Male 46.8
Sample D Male 46.9
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 86.1
Min nTPM: 35.0
Sample A Female 86.1
Sample B Female 45.1
Sample C Male 48.3
Sample D Male 35.0
Periaqueductal gray
nTPM: 40.1
Samples: 3

Max nTPM: 46.1
Min nTPM: 34.6
Sample B Female 39.7
Sample C Male 46.1
Sample D Male 34.6
Superior colliculi
nTPM: 49.2
Samples: 4

Max nTPM: 54.0
Min nTPM: 45.9
Sample A Female 54.0
Sample B Female 50.4
Sample C Male 46.3
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 62.6
Min nTPM: 46.4
Sample A Male 62.6
Sample B Male 50.7
Sample C Female 46.4
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
74800925 Antisense, RP_060315_02_A09, Mouse strain C57BL/6J (56 days, male) 2.1
413828 Antisense, RP_040809_01_H06, Mouse strain C57BL/6J (56 days, male) 0.8

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