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RNH1
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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:86.0 nTPM
HPA Brain:73.7 nTPM
GTEx:86.0 nTPM
FANTOM5:151.3 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:53.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.8
2411 Female, age 72, unknown 76.2
2019 Male, age 18, unknown 73.3
1833 Male, age 53, unknown 63.4
1830 Male, age 51, unknown 63.1
1870 Female, age 42, unknown 63.0
2828 Female, age 72, unknown 56.1
2586 Male, age 75, left hemisphere 54.8
1827 Male, age 72, unknown 50.1
2666 Male, age 74, left hemisphere 45.1
2219 Male, age 76, both hemispheres 42.6
Dorsal raphe nucleus
nTPM: 52.9
2750 Male, age 76, both hemispheres 70.1
2016 Female, age 72, unknown 53.2
2298 Female, age 72, unknown 50.0
1828 Male, age 53, unknown 47.3
2047 Male, age 72, unknown 43.9
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 47.8
1890 Male, age 53, unknown 46.9
1848 Female, age 42, unknown 44.2
2849 Male, age 72, unknown 40.1
Median raphe nucleus
nTPM: 50.7
2220 Male, age 76, midline 50.7
Periaquaductal grey, anterior
nTPM: 48.6
2502 Female, age 75, unknown 56.1
1947 Male, age 18, unknown 45.5
1795 Male, age 51, unknown 44.3
Periaquaductal grey, dorsal
nTPM: 39.2
2464 Female, age 72, unknown 51.5
1831 Male, age 72, unknown 37.5
2850 Male, age 76, both hemispheres 36.5
1840 Male, age 53, unknown 31.3
Periaquaductal grey, lateral
nTPM: 48.1
2272 Male, age 74, both hemispheres 54.5
2140 Male, age 76, both hemispheres 45.6
2053 Male, age 18, unknown 44.2
Pretectal area
nTPM: 47.2
2316 Male, age 76, right hemisphere 55.7
2273 Male, age 74, both hemispheres 54.1
1815 Male, age 53, unknown 53.9
2007 Male, age 72, unknown 53.4
1817 Female, age 42, unknown 48.0
2407 Male, age 75, both hemispheres 46.3
2667 Female, age 75, unknown 44.4
2224 Female, age 72, unknown 44.2
2825 Male, age 18, unknown 44.2
1944 Female, age 72, unknown 38.4
1816 Male, age 51, unknown 36.5
Red nucleus
nTPM: 73.7
1904 Male, age 53, unknown 90.0
2769 Male, age 72, unknown 86.0
2227 Male, age 72, unknown 81.3
2785 Male, age 18, unknown 80.3
2503 Female, age 72, unknown 79.0
1865 Male, age 51, unknown 78.7
1954 Female, age 42, unknown 77.5
1821 Female, age 72, unknown 73.0
2823 Male, age 76, right hemisphere 71.2
2725 Female, age 75, unknown 57.6
2588 Male, age 74, left hemisphere 57.0
2584 Male, age 75, left hemisphere 52.6
Substantia nigra
nTPM: 46.7
2583 Male, age 75, right hemisphere 57.6
1851 Male, age 51, unknown 55.6
2590 Female, age 75, unknown 54.1
1916 Female, age 42, unknown 47.8
1889 Female, age 72, unknown 47.3
2409 Female, age 72, unknown 45.6
2699 Male, age 18, unknown 44.0
1941 Male, age 53, unknown 42.6
2665 Male, age 74, both hemispheres 37.8
2241 Male, age 72, unknown 34.3
Superior colliculus
nTPM: 52.2
1995 Male, age 72, unknown 71.6
1913 Female, age 42, unknown 67.7
1839 Male, age 51, unknown 54.0
1796 Male, age 53, unknown 52.9
2587 Male, age 74, left hemisphere 51.3
2668 Female, age 75, unknown 50.3
2261 Male, age 18, unknown 46.9
1895 Male, age 76, right hemisphere 43.5
2087 Female, age 72, unknown 43.1
2664 Male, age 75, both hemispheres 41.0
Ventral tegmental area
nTPM: 54.4
2410 Female, age 72, unknown 66.8
2223 Female, age 72, unknown 62.8
1915 Female, age 42, unknown 50.5
1942 Male, age 51, unknown 50.4
2218 Male, age 76, both hemispheres 49.4
2021 Male, age 53, unknown 46.8

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 86.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.0
Samples: 139

Max nTPM: 193.4
Min nTPM: 43.5
Std nTPM: 25.5
Median nTPM: 80.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 193.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 176.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 161.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 159.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 151.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 143.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 141.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 131.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 131.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 125.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 124.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 120.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 118.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 116.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 115.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 115.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 110.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 109.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 107.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 104.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 102.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 102.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 102.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 99.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 99.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 99.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 99.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 98.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 97.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 97.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 97.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 96.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 96.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 95.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 94.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 94.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 93.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 93.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 93.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 93.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 91.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 90.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 90.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 90.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 89.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 89.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 89.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 88.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 87.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 87.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 86.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 86.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 85.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 85.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 84.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 84.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 84.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 83.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 83.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 82.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 82.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 82.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 81.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 81.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 80.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 80.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 80.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 79.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 79.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 79.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 79.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 79.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 79.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 79.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 78.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 78.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 77.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 77.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 77.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 76.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 76.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 76.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 76.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 76.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 76.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 75.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 72.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 72.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 72.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 71.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 71.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 71.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 71.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 71.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 71.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 71.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 70.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 70.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 69.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 69.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 69.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 69.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 68.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 68.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 67.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 67.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 67.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 66.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 65.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 65.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 65.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 63.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 63.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 62.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 61.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 61.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 61.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 61.3
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 60.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 60.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 58.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 58.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 58.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 58.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 57.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 57.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 56.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 56.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 55.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 54.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 50.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 43.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 43.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.3
FF:10158-103A5 76 years, female 151.3

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 53.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.8
Samples: 4

Max nTPM: 61.6
Min nTPM: 43.8
Sample A Female 61.6
Sample B Female 43.8
Sample C Male 46.8
Sample D Male 46.9
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 86.1
Min nTPM: 35.0
Sample A Female 86.1
Sample B Female 45.1
Sample C Male 48.3
Sample D Male 35.0
Periaqueductal gray
nTPM: 40.1
Samples: 3

Max nTPM: 46.1
Min nTPM: 34.6
Sample B Female 39.7
Sample C Male 46.1
Sample D Male 34.6
Superior colliculi
nTPM: 49.2
Samples: 4

Max nTPM: 54.0
Min nTPM: 45.9
Sample A Female 54.0
Sample B Female 50.4
Sample C Male 46.3
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 53.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 62.6
Min nTPM: 46.4
Sample A Male 62.6
Sample B Male 50.7
Sample C Female 46.4
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
74800925 Antisense, RP_060315_02_A09, Mouse strain C57BL/6J (56 days, male) 2.1
413828 Antisense, RP_040809_01_H06, Mouse strain C57BL/6J (56 days, male) 0.8

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