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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
22.8
nTPM
HPA Brain:
34.8
nTPM
GTEx:
22.8
nTPM
FANTOM5:
53.4
Scaled Tags Per Million
Pig:
36.2
nTPM
Mouse:
47.0
nTPM
Allen mouse:
18.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
34.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 32.2
2019
Male, age 18, unknown
39.7
1827
Male, age 72, unknown
35.1
2411
Female, age 72, unknown
34.9
2586
Male, age 75, left hemisphere
32.7
1833
Male, age 53, unknown
31.0
2219
Male, age 76, both hemispheres
30.9
1870
Female, age 42, unknown
30.7
2666
Male, age 74, left hemisphere
30.5
2828
Female, age 72, unknown
28.7
1830
Male, age 51, unknown
27.6
Dorsal raphe nucleus nTPM: 30.4
2298
Female, age 72, unknown
33.7
2750
Male, age 76, both hemispheres
31.9
1828
Male, age 53, unknown
31.8
2047
Male, age 72, unknown
31.5
2016
Female, age 72, unknown
23.3
Inferior colliculus nTPM: 34.8
2097
Female, age 72, unknown
37.2
1848
Female, age 42, unknown
36.0
1890
Male, age 53, unknown
33.8
2849
Male, age 72, unknown
32.0
Median raphe nucleus nTPM: 34.1
2220
Male, age 76, midline
34.1
Periaquaductal grey, anterior nTPM: 28.8
2502
Female, age 75, unknown
29.0
1795
Male, age 51, unknown
28.9
1947
Male, age 18, unknown
28.3
Periaquaductal grey, dorsal nTPM: 26.0
1831
Male, age 72, unknown
28.2
1840
Male, age 53, unknown
26.3
2464
Female, age 72, unknown
25.5
2850
Male, age 76, both hemispheres
23.9
Periaquaductal grey, lateral nTPM: 25.3
2272
Male, age 74, both hemispheres
28.7
2053
Male, age 18, unknown
24.4
2140
Male, age 76, both hemispheres
22.9
Pretectal area nTPM: 31.0
1817
Female, age 42, unknown
37.7
1816
Male, age 51, unknown
37.0
2007
Male, age 72, unknown
34.7
2667
Female, age 75, unknown
33.3
1944
Female, age 72, unknown
31.2
1815
Male, age 53, unknown
30.0
2407
Male, age 75, both hemispheres
29.3
2224
Female, age 72, unknown
28.1
2273
Male, age 74, both hemispheres
27.0
2316
Male, age 76, right hemisphere
26.4
2825
Male, age 18, unknown
25.7
Red nucleus nTPM: 34.0
2823
Male, age 76, right hemisphere
43.0
1821
Female, age 72, unknown
37.7
2785
Male, age 18, unknown
37.1
2769
Male, age 72, unknown
34.7
1904
Male, age 53, unknown
34.5
1954
Female, age 42, unknown
34.1
2584
Male, age 75, left hemisphere
34.1
2227
Male, age 72, unknown
32.4
1865
Male, age 51, unknown
31.7
2725
Female, age 75, unknown
30.1
2503
Female, age 72, unknown
29.6
2588
Male, age 74, left hemisphere
29.5
Substantia nigra nTPM: 32.2
1916
Female, age 42, unknown
40.5
1889
Female, age 72, unknown
35.5
1941
Male, age 53, unknown
35.3
2665
Male, age 74, both hemispheres
34.9
1851
Male, age 51, unknown
31.3
2583
Male, age 75, right hemisphere
30.8
2590
Female, age 75, unknown
29.2
2241
Male, age 72, unknown
28.8
2699
Male, age 18, unknown
28.8
2409
Female, age 72, unknown
26.5
Superior colliculus nTPM: 29.1
1895
Male, age 76, right hemisphere
33.2
1839
Male, age 51, unknown
32.8
1796
Male, age 53, unknown
32.6
2668
Female, age 75, unknown
32.3
2087
Female, age 72, unknown
30.3
2261
Male, age 18, unknown
29.4
2587
Male, age 74, left hemisphere
28.3
1913
Female, age 42, unknown
26.6
1995
Male, age 72, unknown
25.1
2664
Male, age 75, both hemispheres
20.0
Ventral tegmental area nTPM: 31.4
2410
Female, age 72, unknown
35.3
2223
Female, age 72, unknown
34.9
2218
Male, age 76, both hemispheres
33.2
1915
Female, age 42, unknown
31.7
1942
Male, age 51, unknown
28.6
2021
Male, age 53, unknown
24.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
22.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 22.8
Samples: 139
Max nTPM: 50.5
Min nTPM: 11.7
Std nTPM: 6.2
Median nTPM: 21.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
50.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
45.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
39.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
36.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
35.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
34.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
33.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
33.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
32.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
32.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
32.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
31.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
30.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
30.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
29.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
29.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
29.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
29.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
29.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
28.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
28.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
28.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
28.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
28.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
27.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
27.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
27.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
27.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
27.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
26.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
26.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
26.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
26.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
26.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
26.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
25.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
25.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
25.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
25.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
25.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
24.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
24.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
24.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
24.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
24.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
24.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
24.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
23.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
23.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
23.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
23.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
23.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
23.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
23.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
23.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
23.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
22.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
22.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
21.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
21.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
21.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
21.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
21.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
21.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
21.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
21.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
21.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
21.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
21.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
20.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
20.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
20.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
20.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
20.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
20.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
20.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
20.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
20.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
20.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
20.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
20.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
20.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
20.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
20.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
20.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
19.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
19.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
19.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
19.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
19.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
19.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
19.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
19.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
19.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
19.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
18.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
18.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
18.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
18.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
17.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
17.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
17.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
17.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
17.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
17.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
17.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
16.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
16.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
16.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
16.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
16.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
15.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
15.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
15.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
15.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
15.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
14.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
14.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
13.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
11.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
47.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 47.0
Samples: 4
Max nTPM: 51.8
Min nTPM: 42.5
Sample A
Male
51.8
Sample B
Male
45.4
Sample C
Female
42.5
Sample D
Female
48.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.