BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.1 nTPM
HPA:50.1 nTPM
GTEx:43.6 nTPM
FANTOM5:65.5 Scaled Tags Per Million
Pig:40.0 nTPM
Mouse:42.7 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.1
2481 Female, age 94, left hemisphere 51.6
2289 Male, age 61, right hemisphere 50.5
2290 Female, age 72, unknown 50.3
2288 Male, age 75, left hemisphere 50.1
1857 Female, age 85, left hemisphere 49.9
1781 Male, age 74, unknown 49.7
2846 Female, age 79, unknown 49.5
1854 Male, age 80, left hemisphere 49.0
Claustrum
nTPM: 48.6
2645 Female, age 72, unknown 50.4
2284 Female, age 91, both hemispheres 50.0
1956 Male, age 74, unknown 49.9
2196 Female, age 79, unknown 49.2
2568 Male, age 61, both hemispheres 48.6
2198 Male, age 80, both hemispheres 48.5
2491 Male, age 75, both hemispheres 48.1
2292 Female, age 85, both hemispheres 47.4
2392 Female, age 94, both hemispheres 45.1
Globus pallidus, externus
nTPM: 46.4
2772 Female, age 79, unknown 48.0
1996 Male, age 80, right hemisphere 46.6
2567 Female, age 72, unknown 46.5
2395 Male, age 75, both hemispheres 46.0
2646 Male, age 61, right hemisphere 45.1
Globus pallidus, internus
nTPM: 45.5
2566 Female, age 72, unknown 47.6
2483 Female, age 94, right hemisphere 46.8
2037 Male, age 80, right hemisphere 45.7
1818 Male, age 74, unknown 45.6
2778 Female, age 91, both hemispheres 45.4
2111 Female, age 85, right hemisphere 44.4
2287 Male, age 75, right hemisphere 43.3
Nucleus accumbens
nTPM: 49.7
1856 Female, age 91, right hemisphere 51.7
1783 Male, age 74, unknown 50.9
2824 Male, age 61, right hemisphere 50.3
1806 Female, age 85, left hemisphere 50.0
2698 Female, age 72, unknown 49.3
2286 Male, age 75, left hemisphere 49.0
2732 Male, age 80, right hemisphere 49.0
2391 Female, age 94, left hemisphere 47.4
Nucleus basalis of Meynert
nTPM: 47.7
2821 Male, age 75, both hemispheres 48.3
2393 Male, age 80, right hemisphere 48.2
2484 Female, age 94, left hemisphere 47.5
2569 Male, age 61, both hemispheres 47.0
Nucleus of the diagonal band
nTPM: 49.2
2029 Male, age 61, right hemisphere 49.4
1812 Female, age 91, both hemispheres 49.3
2195 Female, age 85, both hemispheres 49.2
2775 Male, age 80, right hemisphere 49.2
1979 Male, age 74, unknown 49.0
Olfactory tubercle
nTPM: 49.8
1998 Female, age 91, both hemispheres 50.5
2487 Female, age 94, left hemisphere 49.8
2856 Male, age 75, right hemisphere 49.6
1846 Male, age 80, right hemisphere 49.3
Putamen
nTPM: 49.4
1937 Female, age 91, right hemisphere 51.3
2482 Female, age 94, left hemisphere 50.9
2647 Male, age 75, left hemisphere 50.1
2489 Female, age 72, unknown 49.4
1838 Male, age 80, right hemisphere 48.3
1829 Male, age 74, unknown 47.9
2466 Female, age 79, unknown 47.8
Septal nuclei
nTPM: 49.7
1960 Male, age 74, unknown 54.1
2059 Female, age 85, both hemispheres 51.7
2031 Female, age 72, unknown 50.8
2629 Female, age 94, right hemisphere 49.2
2009 Female, age 91, both hemispheres 49.1
2199 Male, age 80, right hemisphere 47.2
2394 Male, age 61, left hemisphere 46.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.5
Samples: 246

Max nTPM: 77.4
Min nTPM: 6.9
Std nTPM: 10.5
Median nTPM: 34.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 77.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 68.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 68.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 66.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 66.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 63.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 61.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 59.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 58.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 56.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.6
Samples: 246

Max nTPM: 135.7
Min nTPM: 14.0
Std nTPM: 16.6
Median nTPM: 40.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 135.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 120.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 99.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 83.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 83.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 82.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 80.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 80.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 80.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 78.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 74.8
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Brain - Putamen (basal ganglia)
Average nTPM: 33.8
Samples: 205

Max nTPM: 75.3
Min nTPM: 13.5
Std nTPM: 9.9
Median nTPM: 32.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 75.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 63.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 61.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 59.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 59.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 59.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 56.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 56.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 52.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 52.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.5
FF:10164-103B2 76 years, female 65.5
Globus pallidus
Scaled Tags Per Million: 21.8
FF:10161-103A8 76 years, female 28.7
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 26.5
FF:10037-101F1 23-56 years, mixed 26.5
Putamen
Scaled Tags Per Million: 42.8
FF:10176-103C5 60 years, female 42.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.0
Pig sample Sample description nTPM
Caudate
nTPM: 32.0
Samples: 4

Max nTPM: 38.8
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 33.4
Sample C Male 38.8
Sample D Male 28.3
Putamen
nTPM: 40.0
Samples: 4

Max nTPM: 46.5
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 36.4
Sample C Male 46.5
Sample D Male 41.0
Septum
nTPM: 31.5
Samples: 4

Max nTPM: 35.1
Min nTPM: 24.3
Sample A Female 35.1
Sample B Female 33.9
Sample C Male 32.7
Sample D Male 24.3
Ventral pallidum
nTPM: 32.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 25.0
Sample A Female 25.0
Sample B Female 42.9
Sample C Male 35.7
Sample D Male 27.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.8
Samples: 4

Max nTPM: 34.5
Min nTPM: 23.0
Sample A Male 23.0
Sample B Male 26.8
Sample C Female 34.5
Sample D Female 30.9
Septum
nTPM: 25.0
Samples: 4

Max nTPM: 27.9
Min nTPM: 21.8
Sample A Male 27.6
Sample B Male 27.9
Sample C Female 22.8
Sample D Female 21.8
Ventral forebrain
nTPM: 42.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 37.4
Sample A Male 42.5
Sample B Male 37.4
Sample C Female 43.6
Sample D Female 47.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
69407248 Antisense, RP_050414_01_C01, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 0.9
69407248 Antisense, RP_050414_01_C01, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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