MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.1 nTPM
HPA:48.1 nTPM
GTEx:23.9 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:26.4 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
2666 Male, age 74, left hemisphere 50.1
2586 Male, age 75, left hemisphere 49.8
2219 Male, age 76, both hemispheres 48.2
1870 Female, age 42, unknown 48.1
1830 Male, age 51, unknown 47.0
2828 Female, age 72, unknown 46.8
1827 Male, age 72, unknown 46.5
1833 Male, age 53, unknown 46.3
2411 Female, age 72, unknown 45.9
2019 Male, age 18, unknown 44.0
Dorsal raphe nucleus
nTPM: 47.1
2047 Male, age 72, unknown 47.9
2016 Female, age 72, unknown 47.8
1828 Male, age 53, unknown 47.1
2750 Male, age 76, both hemispheres 46.5
2298 Female, age 72, unknown 46.3
Inferior colliculus
nTPM: 47.8
2849 Male, age 72, unknown 48.6
1890 Male, age 53, unknown 47.8
1848 Female, age 42, unknown 47.6
2097 Female, age 72, unknown 47.1
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 47.2
2338 Male, age 61, both hemispheres 48.5
2334 Male, age 80, both hemispheres 46.6
1921 Female, age 85, both hemispheres 46.4
Periaquaductal grey, anterior
nTPM: 46.6
1947 Male, age 18, unknown 48.2
2502 Female, age 75, unknown 46.4
1795 Male, age 51, unknown 45.1
Periaquaductal grey, dorsal
nTPM: 46.2
1840 Male, age 53, unknown 47.1
2850 Male, age 76, both hemispheres 46.6
1831 Male, age 72, unknown 45.6
2464 Female, age 72, unknown 45.4
Periaquaductal grey, lateral
nTPM: 47.7
2140 Male, age 76, both hemispheres 48.9
2272 Male, age 74, both hemispheres 47.2
2053 Male, age 18, unknown 47.0
Pretectal area
nTPM: 45.8
2407 Male, age 75, both hemispheres 48.0
2825 Male, age 18, unknown 47.9
2316 Male, age 76, right hemisphere 47.8
2273 Male, age 74, both hemispheres 46.6
2224 Female, age 72, unknown 45.8
1944 Female, age 72, unknown 45.0
2007 Male, age 72, unknown 44.7
1815 Male, age 53, unknown 44.6
2667 Female, age 75, unknown 44.6
1816 Male, age 51, unknown 44.2
1817 Female, age 42, unknown 44.1
Red nucleus
nTPM: 46.3
2769 Male, age 72, unknown 49.2
2227 Male, age 72, unknown 47.9
1954 Female, age 42, unknown 47.3
2503 Female, age 72, unknown 47.1
1865 Male, age 51, unknown 47.0
2584 Male, age 75, left hemisphere 46.3
1904 Male, age 53, unknown 45.9
1821 Female, age 72, unknown 45.5
2725 Female, age 75, unknown 45.5
2785 Male, age 18, unknown 44.8
2823 Male, age 76, right hemisphere 44.7
2588 Male, age 74, left hemisphere 44.6
Substantia nigra
nTPM: 48.1
1916 Female, age 42, unknown 51.9
2699 Male, age 18, unknown 50.9
2590 Female, age 75, unknown 49.4
1941 Male, age 53, unknown 49.0
1851 Male, age 51, unknown 48.8
2665 Male, age 74, both hemispheres 48.8
2583 Male, age 75, right hemisphere 48.2
2241 Male, age 72, unknown 45.3
1889 Female, age 72, unknown 44.9
2409 Female, age 72, unknown 43.6
Superior colliculus
nTPM: 46.4
2664 Male, age 75, both hemispheres 48.3
1839 Male, age 51, unknown 47.3
2587 Male, age 74, left hemisphere 47.1
1796 Male, age 53, unknown 47.0
2668 Female, age 75, unknown 47.0
1895 Male, age 76, right hemisphere 46.0
2261 Male, age 18, unknown 46.0
1913 Female, age 42, unknown 45.7
1995 Male, age 72, unknown 45.4
2087 Female, age 72, unknown 44.3
Ventral tegmental area
nTPM: 47.5
1915 Female, age 42, unknown 50.3
1942 Male, age 51, unknown 48.1
2223 Female, age 72, unknown 47.0
2021 Male, age 53, unknown 46.9
2218 Male, age 76, both hemispheres 46.8
2410 Female, age 72, unknown 45.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 139

Max nTPM: 55.8
Min nTPM: 7.8
Std nTPM: 8.4
Median nTPM: 23.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 45.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 45.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 42.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 40.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 38.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 36.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 35.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.6
FF:10158-103A5 76 years, female 19.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.1
Pig sample Sample description nTPM
Midbrain
nTPM: 34.5
Samples: 4

Max nTPM: 44.7
Min nTPM: 25.4
Sample A Female 33.4
Sample B Female 34.6
Sample C Male 25.4
Sample D Male 44.7
Periaqueductal gray
nTPM: 30.0
Samples: 3

Max nTPM: 33.9
Min nTPM: 25.3
Sample B Female 30.8
Sample C Male 33.9
Sample D Male 25.3
Substantia nigra
nTPM: 33.7
Samples: 4

Max nTPM: 36.5
Min nTPM: 30.8
Sample A Female 36.5
Sample B Female 36.2
Sample C Male 31.1
Sample D Male 30.8
Superior colliculi
nTPM: 40.1
Samples: 4

Max nTPM: 60.0
Min nTPM: 27.4
Sample A Female 60.0
Sample B Female 27.4
Sample C Male 27.9
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 23.9
Sample A Male 29.1
Sample B Male 25.9
Sample C Female 23.9
Sample D Female 26.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69407248 Antisense, RP_050414_01_C01, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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