MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:24.3 nTPM
GTEx:11.5 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:43.0 nTPM
Mouse:28.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2586 Male, age 75, left hemisphere 38.5
2666 Male, age 74, left hemisphere 25.9
2219 Male, age 76, both hemispheres 23.6
2828 Female, age 72, unknown 23.5
1827 Male, age 72, unknown 21.8
2411 Female, age 72, unknown 20.8
1870 Female, age 42, unknown 20.6
1830 Male, age 51, unknown 20.4
1833 Male, age 53, unknown 20.3
2019 Male, age 18, unknown 20.2
Dorsal raphe nucleus
nTPM: 22.1
2047 Male, age 72, unknown 24.4
2016 Female, age 72, unknown 23.9
2298 Female, age 72, unknown 21.7
1828 Male, age 53, unknown 20.8
2750 Male, age 76, both hemispheres 19.6
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 24.0
2849 Male, age 72, unknown 23.0
1890 Male, age 53, unknown 22.9
1848 Female, age 42, unknown 22.5
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 22.3
2502 Female, age 75, unknown 23.4
1795 Male, age 51, unknown 22.0
1947 Male, age 18, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 24.3
1840 Male, age 53, unknown 28.3
1831 Male, age 72, unknown 25.4
2464 Female, age 72, unknown 22.0
2850 Male, age 76, both hemispheres 21.4
Periaquaductal grey, lateral
nTPM: 21.3
2053 Male, age 18, unknown 26.5
2140 Male, age 76, both hemispheres 20.6
2272 Male, age 74, both hemispheres 16.7
Pretectal area
nTPM: 22.6
1816 Male, age 51, unknown 25.8
2407 Male, age 75, both hemispheres 25.0
1815 Male, age 53, unknown 24.7
1944 Female, age 72, unknown 24.4
1817 Female, age 42, unknown 23.5
2825 Male, age 18, unknown 23.1
2273 Male, age 74, both hemispheres 21.7
2224 Female, age 72, unknown 21.6
2007 Male, age 72, unknown 20.4
2316 Male, age 76, right hemisphere 19.8
2667 Female, age 75, unknown 18.5
Red nucleus
nTPM: 21.7
2584 Male, age 75, left hemisphere 29.4
2503 Female, age 72, unknown 24.8
2725 Female, age 75, unknown 24.4
2823 Male, age 76, right hemisphere 22.1
2588 Male, age 74, left hemisphere 21.3
1821 Female, age 72, unknown 20.9
1904 Male, age 53, unknown 20.5
2227 Male, age 72, unknown 19.9
1865 Male, age 51, unknown 19.8
1954 Female, age 42, unknown 19.8
2769 Male, age 72, unknown 19.5
2785 Male, age 18, unknown 18.6
Substantia nigra
nTPM: 21.8
2583 Male, age 75, right hemisphere 25.0
1851 Male, age 51, unknown 24.1
2699 Male, age 18, unknown 22.8
1889 Female, age 72, unknown 22.5
2590 Female, age 75, unknown 22.4
2241 Male, age 72, unknown 22.2
2665 Male, age 74, both hemispheres 20.5
2409 Female, age 72, unknown 20.3
1916 Female, age 42, unknown 19.3
1941 Male, age 53, unknown 18.4
Superior colliculus
nTPM: 24.3
2664 Male, age 75, both hemispheres 29.4
1995 Male, age 72, unknown 28.3
2087 Female, age 72, unknown 25.6
1913 Female, age 42, unknown 25.2
1796 Male, age 53, unknown 24.3
2261 Male, age 18, unknown 24.2
2668 Female, age 75, unknown 23.8
1839 Male, age 51, unknown 21.6
2587 Male, age 74, left hemisphere 21.1
1895 Male, age 76, right hemisphere 19.1
Ventral tegmental area
nTPM: 23.3
2021 Male, age 53, unknown 26.8
2223 Female, age 72, unknown 25.5
1942 Male, age 51, unknown 25.2
1915 Female, age 42, unknown 22.9
2410 Female, age 72, unknown 19.8
2218 Male, age 76, both hemispheres 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.5
Samples: 139

Max nTPM: 52.8
Min nTPM: 4.4
Std nTPM: 5.8
Median nTPM: 10.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 29.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 22.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 19.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 18.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 18.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 18.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.4
Samples: 4

Max nTPM: 40.6
Min nTPM: 33.9
Sample A Female 35.2
Sample B Female 40.6
Sample C Male 33.9
Sample D Male 36.0
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 54.0
Min nTPM: 35.6
Sample A Female 54.0
Sample B Female 44.2
Sample C Male 35.6
Sample D Male 36.8
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 47.5
Min nTPM: 40.5
Sample B Female 47.5
Sample C Male 41.1
Sample D Male 40.5
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 37.6
Min nTPM: 32.1
Sample A Female 34.1
Sample B Female 37.6
Sample C Male 32.1
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 26.8
Sample A Male 26.9
Sample B Male 29.5
Sample C Female 28.7
Sample D Female 26.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73929582 Antisense, RP_051214_03_G04, Mouse strain C57BL/6J (56 days, male) 0.4
69873313 Antisense, RP_050512_01_A04, Mouse strain C57BL/6J (56 days, male) 0.3

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