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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Low
Cells in tubules: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:25.9 nTPM
HPA:8.4 nTPM
GTEx:25.9 nTPM
FANTOM5:11.2 Scaled Tags Per Million

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA069056
Cells in glomeruli Low
Cells in tubules Low



KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPM 8.4
overview
Female, age 58
Kidney sample 55
nTPM: 13.7
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 11.7
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 14.5
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 14
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 2.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 3.4
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 7.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 6.5
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 2.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 25.9
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 25.9
Samples: 85

Max nTPM: 65.3
Min nTPM: 17.5
Std nTPM: 5.9
Median nTPM: 25.4
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 65.3
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 38.4
GTEX-13112-2126-SM-5GCO4 50-59 years, male 35.8
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 35.6
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 34.0
GTEX-12696-0926-SM-5FQTV 60-69 years, male 32.1
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 32.0
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 31.0
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 31.0
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 30.9
GTEX-O5YV-1226-SM-EV795 60-69 years, female 30.9
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 30.8
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 30.4
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 30.0
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 29.9
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 29.8
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 29.7
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 29.5
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 29.0
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 28.2
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 28.1
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 27.6
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 27.6
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 27.3
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 27.0
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 26.7
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 26.6
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 26.6
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 26.6
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 26.6
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 26.6
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 26.6
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 26.3
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 26.3
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 26.1
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 25.8
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 25.8
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 25.7
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 25.6
GTEX-14C39-2126-SM-664OH 40-49 years, male 25.5
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 25.5
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 25.4
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 25.4
GTEX-RN64-1626-SM-48FD7 50-59 years, male 25.2
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 24.6
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 24.6
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 24.0
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 24.0
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 24.0
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 23.9
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 23.8
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 23.8
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 23.7
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 23.6
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 23.6
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 23.5
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 23.4
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 23.4
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 23.4
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 23.4
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 23.3
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 23.3
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 22.9
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 22.8
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 22.7
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 22.3
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 22.2
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 22.1
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 22.0
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 21.8
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 21.7
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 21.6
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 21.4
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 21.0
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 20.8
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 20.7
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 20.7
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 19.9
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 19.8
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 19.8
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 19.3
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 18.6
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 18.5
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 17.5
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 17.5
Show allShow less
Kidney - Medulla
Average nTPM: 23.6
Samples: 4

Max nTPM: 24.6
Min nTPM: 21.5
Std nTPM: 1.2
Median nTPM: 24.1
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 24.6
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 24.3
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 23.9
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 21.5

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 11.2
FF:10017-101C8 60,62,63 years, female 11.2

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