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TBC1D1
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  • TBC1D1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.6 nTPM
HPA:21.6 nTPM
GTEx:14.7 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:4.6 nTPM
Allen mouse:1.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Amygdala
nTPM: 11.2
2514 Male, age 75, right hemisphere 16.2
2517 Female, age 94, left hemisphere 15.1
1987 Female, age 91, left hemisphere 11.9
2695 Female, age 67, right hemisphere 9.5
2814 Male, age 76, right hemisphere 3.2
Basal amygdala
nTPM: 18.3
2243 Female, age 91, right hemisphere 25.9
2609 Male, age 75, right hemisphere 23.0
2110 Male, age 80, left hemisphere 20.4
2685 Female, age 94, left hemisphere 15.8
2827 Female, age 67, right hemisphere 14.9
1955 Male, age 76, both hemispheres 9.7
Central amygdala
nTPM: 12.6
2515 Male, age 75, right hemisphere 20.1
2239 Male, age 80, left hemisphere 15.9
2701 Female, age 91, right hemisphere 13.5
2826 Female, age 94, left hemisphere 8.5
1905 Male, age 76, both hemispheres 4.8
Corticomedial amygdala
nTPM: 21.6
2242 Female, age 91, right hemisphere 28.7
2829 Male, age 80, left hemisphere 25.1
2428 Male, age 75, right hemisphere 23.5
2429 Female, age 94, left hemisphere 20.4
2535 Female, age 67, right hemisphere 17.7
2240 Male, age 76, both hemispheres 14.1
Lateral amygdala
nTPM: 12.6
2516 Male, age 75, right hemisphere 21.0
2255 Female, age 91, right hemisphere 13.1
2830 Female, age 67, right hemisphere 12.6
2256 Male, age 80, left hemisphere 12.3
2534 Female, age 94, left hemisphere 10.7
1883 Male, age 76, both hemispheres 6.2
Stria terminalis, bed nucleus
nTPM: 16.3
1974 Female, age 91, both hemispheres 17.3
2486 Female, age 94, both hemispheres 17.3
2201 Male, age 74, unknown 14.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 14.7
Samples: 152

Max nTPM: 39.7
Min nTPM: 6.6
Std nTPM: 4.0
Median nTPM: 14.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 39.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 26.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 24.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 24.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 23.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 22.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 22.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 21.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 21.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 21.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 20.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 20.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 20.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 19.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 19.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 19.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 19.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 19.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 18.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 18.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 18.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 17.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 17.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 17.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 17.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 17.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 17.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 17.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 16.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 16.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 16.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 16.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 16.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 16.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 16.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 16.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 16.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 15.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 15.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 15.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 15.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 15.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 15.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 15.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 15.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 15.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 15.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 15.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 15.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 15.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 15.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 15.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 15.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 14.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 14.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 14.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 14.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 14.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 14.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 14.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 14.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 14.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 14.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 14.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 14.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 14.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 14.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 14.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 14.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 14.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 14.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 14.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 14.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 14.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 14.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 14.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 14.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 14.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 13.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 13.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 13.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 13.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 13.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 13.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 13.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 13.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 13.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 13.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 13.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 13.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 13.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 13.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 13.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 13.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 13.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 13.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 13.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 13.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 13.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 13.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 13.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 12.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 12.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 12.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 12.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 12.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 12.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 12.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 12.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 12.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 12.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 12.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 12.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 12.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 12.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 12.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 11.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 11.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 11.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 11.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 11.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 11.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 11.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 11.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 11.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 11.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 11.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 10.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 10.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 10.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 10.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 10.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 9.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 9.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 9.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 9.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 9.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 9.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 9.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 7.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 7.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 7.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 7.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 6.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 39.8
FF:10151-102I7 76 years, female 39.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 11.7
Pig sample Sample description nTPM
Amygdala
nTPM: 11.7
Samples: 4

Max nTPM: 12.0
Min nTPM: 11.5
Sample A Female 11.6
Sample B Female 11.5
Sample C Male 12.0
Sample D Male 11.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 4.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Male 4.2
Sample B Male 4.2
Sample C Female 4.5
Sample D Female 5.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
69980166 Antisense, RP_050512_04_A05, Mouse strain C57BL/6J (56 days, male) 1.2
71670698 Antisense, RP_050512_04_A05, Mouse strain C57BL/6J (56 days, male) 0.3

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