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TISSUE ATLAS PRIMARY DATA HYPOTHALAMUS

GENE/PROTEIN

Antibody validation


Dictionary

HYPOTHALAMUS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

N/A

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:6.5RPKM

HYPOTHALAMUS - Annotated protein expression

Pending normal tissue analysis


HYPOTHALAMUS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

6.5

GTEx sample id

RPKM

 

Brain - Hypothalamus

Brain - Hypothalamus
RPKM: 6.5
Samples: 96

Max RPKM: 13.7
Min RPKM: 2.3
Std RPKM: 2
Median RPKM: 6.1
GTEX-13JVG-0011-R8a-SM-5KM3E 13.7
GTEX-XMD1-0011-R8A-SM-4AT48 12.0
GTEX-WHSE-0011-R8A-SM-3P5Z1 11.7
GTEX-11GSP-0011-R8b-SM-5NQ79 10.5
GTEX-13OVJ-0011-R8b-SM-5L3FS 10.5
GTEX-13OW5-0011-R8a-SM-5L3GQ 10.4
GTEX-12WSA-0011-R8a-SM-5P9EX 9.8
GTEX-13SLX-0011-R8b-SM-5PNWZ 9.7
GTEX-13NYS-0011-R8a-SM-5MR5H 9.4
GTEX-X261-0011-R8A-SM-4E3I5 9.0
GTEX-11WQK-0011-R8a-SM-5BC7C 8.9
GTEX-13FLV-0011-R8a-SM-5LZZE 8.7
GTEX-XOTO-0011-R8A-SM-4B65J 8.6
GTEX-145LS-0011-R8b-SM-5PNXA 8.6
GTEX-11H98-0011-R8a-SM-5NQ8V 8.6
GTEX-WVLH-0011-R8A-SM-3MJFC 8.5
GTEX-11ONC-0011-R8b-SM-5NQ87 8.4
GTEX-QVJO-0011-R8A-SM-447C7 8.3
GTEX-X4XX-0011-R8B-SM-46MWM 8.2
GTEX-13OW8-0011-R8a-SM-5L3G5 8.2
GTEX-X4XY-0011-R8A-SM-46MVC 8.1
GTEX-T5JC-0011-R8A-SM-32PLM 8.0
GTEX-13X6K-0011-R8b-SM-5PNZ4 7.8
GTEX-TSE9-0011-R8A-SM-3DB7R 7.8
GTEX-ZAB4-0011-R8b-SM-4SOKF 7.7
GTEX-T6MN-0011-R8A-SM-32QP3 7.6
GTEX-13CIG-0011-R8b-SM-5LZX5 7.4
GTEX-X585-0011-R8A-SM-46MUX 7.3
GTEX-WWYW-0011-R8A-SM-3NB3S 7.2
GTEX-N7MS-0011-R8a-SM-2YUMK 7.1
GTEX-N7MT-0011-R8a-SM-2I5GU 7.1
GTEX-13X6I-0011-R8a-SM-5PNZF 7.0
GTEX-QVUS-0011-R8A-SM-3GAD7 6.9
GTEX-PWO3-0011-R8A-SM-2I5GD 6.9
GTEX-13N1W-0011-R8a-SM-5MR56 6.9
GTEX-145LU-0011-R8b-SM-5PNZG 6.9
GTEX-1445S-0011-R8a-SM-5PNWX 6.8
GTEX-13OVH-0011-R8b-SM-5MR35 6.8
GTEX-NL4W-0011-R8a-SM-2I3G4 6.7
GTEX-R55E-0011-R8A-SM-2TC66 6.6
GTEX-R55F-0011-R8A-SM-2TF4F 6.6
GTEX-WZTO-0011-R8A-SM-4E3II 6.4
GTEX-13RTJ-0011-R8b-SM-5O9DL 6.4
GTEX-11ZTS-0011-R8a-SM-57WDI 6.4
GTEX-RU72-0011-R8A-SM-2TF61 6.3
GTEX-YFC4-0011-R8a-SM-4SOK3 6.2
GTEX-13OW7-0011-R8b-SM-5L3HR 6.2
GTEX-11WQC-0011-R8b-SM-57WCH 6.1
GTEX-13G51-0011-R8b-SM-5LZZ4 6.0
GTEX-147F4-0011-R8b-SM-5S2UN 6.0
GTEX-13SLW-0011-R8b-SM-5SI64 6.0
GTEX-1399T-0011-R8b-SM-5IJD8 5.9
GTEX-13O3Q-0011-R8b-SM-5KM2J 5.9
GTEX-ZF28-0011-R8a-SM-4WWFW 5.9
GTEX-13QIC-0011-R8b-SM-5O9CV 5.8
GTEX-NPJ7-0011-R8a-SM-2I3G2 5.8
GTEX-12WSM-0011-R8a-SM-5DUWJ 5.7
GTEX-ZVT3-0011-R8b-SM-57WDJ 5.7
GTEX-13IVO-0011-R8a-SM-5L3DY 5.7
GTEX-ZDXO-0011-R8a-SM-4WWD7 5.7
GTEX-13NZA-0011-R8b-SM-5KM2Q 5.5
GTEX-P44H-0011-R8A-SM-2XCEL 5.5
GTEX-1313W-0011-R8a-SM-5DUVM 5.5
GTEX-131XH-0011-R8a-SM-5EGLL 5.5
GTEX-13FXS-0011-R8a-SM-5J1MN 5.4
GTEX-NPJ8-0011-R8a-SM-2HMLG 5.4
GTEX-13CF2-0011-R8b-SM-5IJCX 5.4
GTEX-ZUA1-0011-R8b-SM-51MST 5.3
GTEX-S7SE-0011-R8A-SM-2XCDG 5.2
GTEX-11OF3-0011-R8b-SM-57WCS 5.2
GTEX-13QJC-0011-R8b-SM-5S2U6 5.2
GTEX-13OW6-0011-R8a-SM-5L3GF 5.2
GTEX-132Q8-0011-R8b-SM-5DUWX 5.2
GTEX-12ZZX-0011-R8a-SM-5DUW8 5.1
GTEX-14ASI-0011-R8b-SM-5S2UB 5.1
GTEX-YJ89-0011-R8b-SM-4SOK8 5.0
GTEX-13FLW-0011-R8b-SM-5J1MZ 5.0
GTEX-145MH-0011-R8a-SM-5PNUL 5.0
GTEX-Z93S-0011-R8a-SM-4RGNL 4.9
GTEX-Q2AG-0011-R8A-SM-2HMK5 4.9
GTEX-13X6J-0011-R8b-SM-5PNUA 4.9
GTEX-13O3O-0011-R8b-SM-5LUAL 4.7
GTEX-13PDP-0011-R8b-SM-5O9CS 4.7
GTEX-ZXG5-0011-R8a-SM-57WD1 4.5
GTEX-NL3H-0011-R8a-SM-5S2VF 4.5
GTEX-RVPU-0011-R8A-SM-5SI8I 4.5
GTEX-ZVZQ-0011-R8a-SM-51MR5 4.4
GTEX-13NZ8-0011-R8b-SM-5KM48 4.3
GTEX-QMR6-0011-R8A-SM-32PKJ 4.3
GTEX-11ZUS-0011-R8a-SM-5BC73 4.1
GTEX-144GL-0011-R8a-SM-5Q5B1 4.0
GTEX-13OVL-0011-R8a-SM-5L3HH 3.9
GTEX-13NYB-0011-R8a-SM-5KM4R 3.8
GTEX-131XW-0011-R8a-SM-5DUWY 2.9
GTEX-14753-0011-R8b-SM-5S2U1 2.6
GTEX-139TS-0011-R8a-SM-5J1NP 2.3
Show all

HYPOTHALAMUS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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