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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 21.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 27.8
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 20.1
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 16.1
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 22.9
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 23.3
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 31.3
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 26.8
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 31.6
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 35.3
Min RPKM: 7.3
Std RPKM: 4.8
Median RPKM: 14.3
GTEX-Y8E4-2226-SM-5LU94
35.3
GTEX-1399Q-2826-SM-5IJEZ
34.0
GTEX-13FTW-1326-SM-5LZZD
31.3
GTEX-XPVG-2226-SM-4B65U
30.4
GTEX-RM2N-1326-SM-48FCW
26.6
GTEX-S7SE-0326-SM-4AT5Q
25.9
GTEX-PLZ5-1526-SM-3P5ZX
25.7
GTEX-Y9LG-1726-SM-4VBQE
24.7
GTEX-WOFM-1126-SM-4OOSB
24.5
GTEX-SNMC-1026-SM-4DM7K
24.5
GTEX-ZA64-1626-SM-5CVME
24.2
GTEX-QV44-1726-SM-4R1KG
23.0
GTEX-XPT6-1626-SM-4B655
22.9
GTEX-YEC4-1526-SM-4W1YU
22.5
GTEX-WH7G-1926-SM-4LVMM
22.5
GTEX-145MH-2326-SM-5O9AW
22.3
GTEX-Y5V6-1726-SM-4VDSZ
21.9
GTEX-S4Q7-1226-SM-4AD5I
21.8
GTEX-OIZI-0126-SM-3NB13
21.7
GTEX-11LCK-2326-SM-5HL53
21.5
GTEX-YB5E-1926-SM-5IFIG
21.4
GTEX-111CU-1726-SM-5EGHM
21.0
GTEX-11WQK-2826-SM-5EQKH
20.8
GTEX-13O1R-0726-SM-5IJEI
20.6
GTEX-13O21-1226-SM-5J2MK
20.6
GTEX-11ONC-2226-SM-5HL6D
20.6
GTEX-T5JC-0726-SM-4DM55
20.4
GTEX-UPJH-0126-SM-4IHLL
20.1
GTEX-13111-1526-SM-5EGJX
19.7
GTEX-TKQ1-0926-SM-4DXU2
19.5
GTEX-ZDTT-2026-SM-5K7TY
19.1
GTEX-13OW6-0126-SM-5IJGM
19.1
GTEX-139T6-1226-SM-5IFFC
19.0
GTEX-U3ZH-1526-SM-4DXV1
19.0
GTEX-WFON-2026-SM-4LVMW
18.8
GTEX-YFCO-1726-SM-4W21S
18.8
GTEX-O5YT-2126-SM-3MJGD
18.7
GTEX-SUCS-1326-SM-4DM5T
18.6
GTEX-14753-0626-SM-5Q5CY
18.5
GTEX-OOBJ-2126-SM-3NB1N
18.5
GTEX-XAJ8-1326-SM-47JYT
18.4
GTEX-13112-0226-SM-5P9IV
18.3
GTEX-11EI6-2226-SM-5EGJM
18.2
GTEX-XBEC-0126-SM-4GIDT
18.1
GTEX-XBED-2026-SM-4AT5D
18.1
GTEX-111VG-1926-SM-5GIDO
18.1
GTEX-NFK9-0126-SM-3LK5H
18.0
GTEX-ZYFC-0126-SM-5GIEH
18.0
GTEX-U8T8-1126-SM-4DXUE
17.9
GTEX-QLQ7-1426-SM-4R1JX
17.8
GTEX-ZTX8-1126-SM-51MRM
17.8
GTEX-RN64-2326-SM-48FDW
17.6
GTEX-145MO-0126-SM-5S2QU
17.5
GTEX-147JS-0126-SM-5S2TW
17.5
GTEX-U3ZM-1626-SM-4DXSK
17.2
GTEX-13NYB-2226-SM-5MR58
17.1
GTEX-T8EM-0126-SM-4DM5R
17.0
GTEX-P4QR-0226-SM-3NMCH
16.9
GTEX-1339X-1926-SM-5PNVP
16.8
GTEX-QV31-1126-SM-4R1K4
16.7
GTEX-S95S-1126-SM-4B64E
16.7
GTEX-S33H-0126-SM-4AD62
16.7
GTEX-144GN-1626-SM-5Q5BU
16.6
GTEX-OXRL-2126-SM-3NM98
16.5
GTEX-ZT9X-1426-SM-5DUX1
16.4
GTEX-YEC3-1726-SM-5IFIK
16.3
GTEX-145LT-0426-SM-5LUAP
16.3
GTEX-YF7O-2026-SM-4W1YE
16.2
GTEX-RUSQ-2126-SM-47JXK
16.1
GTEX-1399R-1626-SM-5P9GG
15.9
GTEX-11TUW-2226-SM-5EQL9
15.9
GTEX-WVLH-2626-SM-4MVNV
15.8
GTEX-Y111-2426-SM-4TT23
15.7
GTEX-11NSD-1026-SM-5N9BE
15.7
GTEX-WZTO-0326-SM-4PQYZ
15.3
GTEX-V955-1926-SM-4KL1L
15.3
GTEX-12WSI-2126-SM-5GCMV
15.0
GTEX-QMRM-1526-SM-4R1K6
14.9
GTEX-13OVH-0726-SM-5N9BU
14.8
GTEX-13O61-2026-SM-5J2M6
14.6
GTEX-117XS-2026-SM-5GID1
14.6
GTEX-WFG8-1926-SM-4LVM1
14.5
GTEX-QLQW-1026-SM-447A9
14.5
GTEX-11WQC-2326-SM-5EQKE
14.4
GTEX-13NZA-2526-SM-5IJFX
14.4
GTEX-1212Z-0326-SM-5FQSJ
14.4
GTEX-XGQ4-2026-SM-4AT6G
14.3
GTEX-11GS4-2026-SM-5N9CP
14.3
GTEX-ZTSS-1526-SM-51MTC
14.2
GTEX-P4QS-2126-SM-3NMCF
14.1
GTEX-XLM4-1526-SM-4AT6D
14.1
GTEX-ZDYS-1326-SM-5IJFF
14.1
GTEX-13NZB-2026-SM-5MR4M
14.1
GTEX-R55C-1426-SM-48FED
14.0
GTEX-11EQ9-1926-SM-5PNVV
14.0
GTEX-X261-2326-SM-4PQYU
13.9
GTEX-OOBK-2126-SM-3LK5T
13.8
GTEX-12C56-1426-SM-5FQSW
13.8
GTEX-REY6-0126-SM-48FDT
13.8
GTEX-N7MS-0126-SM-3TW8O
13.7
GTEX-SNOS-1126-SM-4DM67
13.6
GTEX-11P82-1526-SM-5BC5M
13.5
GTEX-VJYA-1426-SM-4KL1Y
13.4
GTEX-R55E-0726-SM-48FCZ
13.4
GTEX-XMK1-2026-SM-4B65K
13.4
GTEX-RWSA-2426-SM-47JXR
13.3
GTEX-ZT9W-2226-SM-57WFU
13.2
GTEX-OIZH-2126-SM-3NB1P
13.1
GTEX-12WSL-2326-SM-5DUXQ
13.1
GTEX-13FHP-2826-SM-5IJFW
13.1
GTEX-X5EB-2026-SM-4E3KA
13.1
GTEX-139TS-1726-SM-5IJG5
13.0
GTEX-139TT-2226-SM-5LZWO
13.0
GTEX-QEG4-0126-SM-48TZE
12.9
GTEX-144GM-0426-SM-5Q5C8
12.9
GTEX-11NUK-2626-SM-5A5MB
12.8
GTEX-13N2G-0126-SM-5N9DV
12.8
GTEX-OHPM-2126-SM-3LK75
12.8
GTEX-132QS-1226-SM-5P9GD
12.8
GTEX-WK11-0326-SM-4OOS6
12.8
GTEX-U4B1-1526-SM-4DXSL
12.7
GTEX-111YS-2026-SM-5EGGL
12.6
GTEX-ZZ64-1126-SM-5GZXY
12.6
GTEX-14ABY-0626-SM-5Q5C9
12.5
GTEX-S3XE-1526-SM-4AD5A
12.5
GTEX-12ZZY-0126-SM-5LZV2
12.4
GTEX-13OVL-0426-SM-5IFG6
12.4
GTEX-YJ89-0626-SM-4TT3Z
12.4
GTEX-Q2AH-1526-SM-48TZG
12.3
GTEX-13OW5-2526-SM-5L3I1
12.2
GTEX-117YW-1526-SM-5EGGP
12.2
GTEX-ZPU1-2126-SM-57WED
12.2
GTEX-U8XE-0126-SM-4E3I3
12.0
GTEX-ZUA1-2726-SM-59HLJ
12.0
GTEX-13N1W-2626-SM-5IJEP
11.9
GTEX-XQ3S-2726-SM-4BOP2
11.9
GTEX-ZVZP-2226-SM-57WBF
11.8
GTEX-WHSB-2126-SM-4M1XF
11.8
GTEX-11DXZ-2126-SM-59881
11.7
GTEX-ZVTK-0126-SM-57WDG
11.7
GTEX-V1D1-2126-SM-4JBH4
11.7
GTEX-11TT1-2226-SM-5GU6B
11.6
GTEX-ZYT6-2726-SM-5GICP
11.6
GTEX-ZQUD-2026-SM-51MSM
11.2
GTEX-12696-0226-SM-5EGL3
11.2
GTEX-S7PM-0626-SM-4AD4Q
11.2
GTEX-111FC-1926-SM-5GZYC
11.2
GTEX-11NV4-1726-SM-5N9FC
11.2
GTEX-13VXU-0726-SM-5J2O7
11.1
GTEX-144GL-0726-SM-5LU4P
11.0
GTEX-13FLW-2126-SM-5N9FD
10.9
GTEX-X3Y1-2626-SM-4PQZI
10.5
GTEX-Q2AI-1226-SM-48U14
10.4
GTEX-QEG5-0126-SM-4R1JR
10.4
GTEX-Z93S-1726-SM-5HL8G
10.3
GTEX-ZV7C-2026-SM-5NQ8F
10.2
GTEX-T6MN-2026-SM-4DM7L
10.2
GTEX-ZAB5-2426-SM-5CVMW
10.1
GTEX-11OF3-1826-SM-5987N
10.1
GTEX-TKQ2-1526-SM-4DXUN
9.9
GTEX-11ZUS-2726-SM-5FQUA
9.9
GTEX-14A6H-2326-SM-5Q5B5
9.8
GTEX-11O72-0726-SM-5P9GO
9.7
GTEX-ZAB4-0126-SM-5CVMG
9.3
GTEX-11EQ8-1426-SM-5EGJR
9.0
GTEX-12WSH-0326-SM-5GCNH
9.0
GTEX-131XE-0426-SM-5IJF4
8.5
GTEX-11P7K-1026-SM-5HL6Y
8.5
GTEX-PW2O-1426-SM-48TCD
8.3
GTEX-R55D-0126-SM-48FEL
7.9
GTEX-147F4-0626-SM-5LUAK
7.4
GTEX-12WSM-1326-SM-5GCP9
7.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.