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TISSUE ATLAS PRIMARY DATA PANCREAS

GENE/PROTEIN

Antibody validation


Dictionary

Pancreas

Tissue proteome

Pancreas

PANCREAS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:14.9TPM
GTEx:29.6RPKM
FANTOM5:169.3Tags Per Million

PANCREAS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Exocrine glandular cells:Medium
Islets of Langerhans:Not available
 
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA025813

 

Antibody CAB004468

 

Exocrine glandular cells

Low   High  

Islets of Langerhans

Medium  
      
   
   
   

PANCREAS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

14.9

overview Female, age 59
Sample 1
TPM: 15.9
Cell types%
Exocrine glandular cells: 75
Islets of Langerhans: 10
Ductal cells: 5
Other cell types: 10
overview Male, age 60
Sample 2
TPM: 13.9
Cell types%
Exocrine glandular cells: 90
Islets of Langerhans: 5
Ductal cells: 5

PANCREAS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

29.6

GTEx sample id

RPKM

 

Pancreas

Pancreas
RPKM: 29.6
Samples: 171

Max RPKM: 51
Min RPKM: 9.7
Std RPKM: 7.8
Median RPKM: 29.1
GTEX-PWOO-0626-SM-48TZH 51.0
GTEX-WFON-0626-SM-4LVLX 50.7
GTEX-Q2AH-0926-SM-48TZK 48.3
GTEX-144GN-0826-SM-5LU5G 47.0
GTEX-11TT1-0326-SM-5LUAY 45.7
GTEX-13X6H-0626-SM-5LU53 45.5
GTEX-132QS-0926-SM-5P9GB 45.1
GTEX-Y9LG-0726-SM-4VDS3 44.7
GTEX-QCQG-0426-SM-48U29 44.5
GTEX-13N11-0226-SM-5KM3C 43.9
GTEX-QDVN-0926-SM-2I5GL 42.5
GTEX-WFG7-0426-SM-4LMK5 42.1
GTEX-WFG8-0326-SM-4LVN4 41.4
GTEX-13FH7-1426-SM-5IFIC 41.3
GTEX-O5YT-1026-SM-3MJGF 40.7
GTEX-U4B1-0726-SM-4DXUA 40.3
GTEX-QDVJ-1226-SM-48U1V 40.2
GTEX-XBED-0226-SM-47JY8 39.9
GTEX-R55G-0326-SM-48FDM 39.8
GTEX-13CF3-1026-SM-5LZWY 39.3
GTEX-S32W-0826-SM-4AD5Z 39.3
GTEX-13PL7-2226-SM-5L3IC 39.1
GTEX-139YR-1526-SM-5IFJ1 38.8
GTEX-ZYFG-0826-SM-5BC5T 38.4
GTEX-12WSL-0426-SM-5GCNX 38.2
GTEX-144FL-1526-SM-5Q5CA 37.9
GTEX-P4QS-1026-SM-3NMCW 37.8
GTEX-1399U-0926-SM-5IFHA 37.8
GTEX-1339X-1026-SM-5IFH5 37.6
GTEX-WFJO-0626-SM-4LVMC 37.5
GTEX-131XF-1426-SM-5BC68 37.3
GTEX-XYKS-1226-SM-4BRVI 37.0
GTEX-1497J-0426-SM-5Q5CO 36.8
GTEX-13VXT-1226-SM-5LU3M 36.8
GTEX-131XE-1926-SM-5IFER 36.6
GTEX-145MN-1426-SM-5SI9H 36.4
GTEX-XV7Q-0926-SM-4BRVQ 35.9
GTEX-YB5E-0526-SM-4VDSD 35.9
GTEX-14E6E-1426-SM-5RQI2 35.7
GTEX-Y114-0826-SM-4TT77 35.7
GTEX-OHPL-1026-SM-3MJGI 35.7
GTEX-11P7K-0526-SM-5BC5I 35.4
GTEX-X5EB-0526-SM-46MVP 35.3
GTEX-13D11-2226-SM-5IFEO 35.1
GTEX-ZP4G-0426-SM-4YCER 35.1
GTEX-SIU7-0926-SM-4BRX1 33.6
GTEX-ZTPG-1026-SM-5DUWP 33.3
GTEX-OOBK-1026-SM-48TC2 33.1
GTEX-Y3I4-0826-SM-4TT2A 33.1
GTEX-Q2AI-0426-SM-48U13 33.1
GTEX-111CU-0526-SM-5EGHK 32.9
GTEX-13YAN-2126-SM-5Q5C4 32.9
GTEX-X4LF-0326-SM-4QAS9 32.9
GTEX-Y5LM-0526-SM-4V6G3 32.9
GTEX-1399S-0326-SM-5IFFS 32.8
GTEX-UJHI-0626-SM-3DB8T 32.5
GTEX-T5JW-0226-SM-4DM7I 32.5
GTEX-ZVP2-0726-SM-59HKY 32.5
GTEX-XGQ4-0226-SM-4GIDS 32.4
GTEX-Y8LW-1026-SM-5IFJY 32.4
GTEX-1211K-1126-SM-5EGGB 32.0
GTEX-ZZPU-0726-SM-5N9C8 31.9
GTEX-PSDG-1526-SM-48TCY 31.8
GTEX-13OVI-0526-SM-5IFFQ 31.5
GTEX-XPVG-0326-SM-4B653 31.2
GTEX-ZV7C-0726-SM-59HKH 31.1
GTEX-UJMC-1126-SM-3GADP 31.1
GTEX-Y3IK-0426-SM-4WWE2 30.8
GTEX-11LCK-0226-SM-5A5M6 30.7
GTEX-146FR-0126-SM-5Q5F3 30.7
GTEX-ZLFU-0726-SM-57WF6 30.5
GTEX-12WSK-0226-SM-5BC62 30.4
GTEX-WHWD-0726-SM-4OORX 30.1
GTEX-QLQ7-0626-SM-4R1JT 30.1
GTEX-145ME-0326-SM-5S2QO 30.1
GTEX-ZYWO-1326-SM-5SI8X 29.9
GTEX-T8EM-0826-SM-4DM76 29.8
GTEX-ZVZP-0626-SM-59HL5 29.5
GTEX-NPJ8-2126-SM-3MJGK 29.5
GTEX-TML8-0526-SM-32QOQ 29.4
GTEX-ZT9W-0926-SM-57WFS 29.3
GTEX-13U4I-1526-SM-5IFFF 29.3
GTEX-UPIC-0726-SM-3GADW 29.3
GTEX-14ICL-1126-SM-5S2RE 29.2
GTEX-X15G-0726-SM-4PQZ5 29.2
GTEX-QMRM-0326-SM-4R1K5 29.1
GTEX-117YX-0226-SM-5EGH6 29.1
GTEX-11EQ9-1026-SM-5H134 29.0
GTEX-SNOS-0926-SM-4DM7A 28.9
GTEX-SE5C-0326-SM-4BRWX 28.6
GTEX-11VI4-0426-SM-5EGHZ 28.6
GTEX-V955-0326-SM-4JBGV 28.6
GTEX-S4P3-0626-SM-4AD59 28.5
GTEX-13W3W-1026-SM-5IFG4 28.3
GTEX-W5WG-0826-SM-4RGNE 28.3
GTEX-12WSN-0826-SM-5GCOF 28.2
GTEX-13FTX-1226-SM-5IFGN 28.1
GTEX-OHPM-1026-SM-3LK74 27.9
GTEX-V1D1-0726-SM-4JBH7 27.8
GTEX-VJYA-0826-SM-4KL1M 27.6
GTEX-YFCO-1026-SM-5LU9S 27.6
GTEX-S3XE-0526-SM-4AD4G 27.6
GTEX-1122O-0726-SM-5GIEV 27.4
GTEX-ZPIC-0926-SM-4WWFK 27.3
GTEX-SUCS-1426-SM-4DM5W 27.1
GTEX-P4PQ-1026-SM-3NMCN 27.0
GTEX-ZC5H-0826-SM-5N9FH 26.8
GTEX-13FTW-0526-SM-5IFIP 26.7
GTEX-XXEK-1726-SM-4BRVB 26.4
GTEX-R53T-0426-SM-48FEM 26.2
GTEX-131XG-1426-SM-5GCMO 26.2
GTEX-ZVT2-2026-SM-5NQ8Q 26.2
GTEX-132AR-1826-SM-5EGHR 26.0
GTEX-ZLWG-0326-SM-4WWC7 26.0
GTEX-ZG7Y-0326-SM-4WWEY 25.9
GTEX-PW2O-0826-SM-48TC5 25.8
GTEX-WH7G-0826-SM-4LVMR 25.6
GTEX-ZYW4-2126-SM-59HJ9 25.4
GTEX-1128S-0826-SM-5GZZI 25.1
GTEX-ZAB5-0826-SM-5P9FU 24.9
GTEX-11DXX-0926-SM-5H112 24.7
GTEX-XMK1-0326-SM-4B652 24.7
GTEX-PLZ6-0726-SM-3P619 24.7
GTEX-TMMY-1326-SM-4DXU9 24.3
GTEX-TKQ2-0426-SM-4DXUO 24.2
GTEX-NFK9-1626-SM-3LK5J 24.1
GTEX-S95S-0726-SM-4B64H 24.1
GTEX-RWS6-1126-SM-47JXC 24.0
GTEX-WI4N-1826-SM-4OOSF 24.0
GTEX-11XUK-0626-SM-5N9ES 23.9
GTEX-WYVS-0926-SM-4SOJV 23.5
GTEX-XUW1-1726-SM-4BOOZ 23.4
GTEX-YEC3-0626-SM-5IFHZ 23.2
GTEX-111YS-1226-SM-5EGGJ 23.0
GTEX-WRHK-0226-SM-4MVOH 22.7
GTEX-PX3G-1026-SM-48TZW 22.7
GTEX-13O61-2126-SM-5IJEO 22.6
GTEX-RM2N-0326-SM-48FD8 22.5
GTEX-11I78-0626-SM-5A5LZ 22.5
GTEX-YF7O-1326-SM-4W1ZR 22.4
GTEX-1399R-0426-SM-5IJE3 22.4
GTEX-12BJ1-1126-SM-5EGGG 22.3
GTEX-145MO-2126-SM-5Q5CZ 22.0
GTEX-146FQ-1526-SM-5Q5CX 21.7
GTEX-14AS3-0326-SM-5Q5DB 21.7
GTEX-ZPU1-0226-SM-4WWC9 21.5
GTEX-X3Y1-0726-SM-3P5YU 21.1
GTEX-QEL4-1326-SM-447AD 21.1
GTEX-ZF3C-2026-SM-4WWB5 21.0
GTEX-S33H-1226-SM-4AD69 21.0
GTEX-QLQW-0326-SM-447A8 20.9
GTEX-13O1R-1826-SM-5KM3B 20.8
GTEX-QV31-0226-SM-447BO 20.7
GTEX-YEC4-1326-SM-5IFHG 20.6
GTEX-XBEW-1626-SM-4SOJP 20.0
GTEX-QV44-0426-SM-4R1KF 19.6
GTEX-R55D-1426-SM-48FEN 19.5
GTEX-Y8E4-1326-SM-5IFIY 19.0
GTEX-P4PP-1026-SM-3NM9O 18.9
GTEX-Y5V5-1026-SM-5LUAH 18.5
GTEX-YB5K-1826-SM-5IFJC 18.4
GTEX-WQUQ-2126-SM-4OOSO 18.3
GTEX-ZYY3-0826-SM-5E44R 18.1
GTEX-XQ8I-1926-SM-4BOOK 17.0
GTEX-OOBJ-1026-SM-3NB2L 16.4
GTEX-11ONC-0526-SM-5BC57 16.3
GTEX-11NSD-0526-SM-5A5LT 15.7
GTEX-ZAB4-1726-SM-5HL8C 15.4
GTEX-Q734-0426-SM-48TZX 14.9
GTEX-12WSG-1026-SM-5EGII 11.9
GTEX-13FLV-0626-SM-5IFEY 9.7
Show all

PANCREAS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

169.3

FANTOM5 sample id

Sample description

Tags Per Million

Pancreas
Tags Per Million: 169.3
FF:10049-101G4 52 years, male 169.3

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