MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:16.4 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:30.1 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.3
2586 Male, age 75, left hemisphere 19.2
2019 Male, age 18, unknown 17.6
2828 Female, age 72, unknown 16.3
1827 Male, age 72, unknown 15.8
2666 Male, age 74, left hemisphere 15.0
1870 Female, age 42, unknown 14.9
1833 Male, age 53, unknown 14.6
2219 Male, age 76, both hemispheres 13.7
1830 Male, age 51, unknown 13.5
2411 Female, age 72, unknown 12.2
Dorsal raphe nucleus
nTPM: 14.3
1828 Male, age 53, unknown 15.7
2047 Male, age 72, unknown 15.5
2016 Female, age 72, unknown 14.9
2298 Female, age 72, unknown 12.8
2750 Male, age 76, both hemispheres 12.6
Inferior colliculus
nTPM: 19.2
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 20.8
2097 Female, age 72, unknown 17.7
1890 Male, age 53, unknown 17.2
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Pedunculopontine tegmental nucleus
nTPM: 14.1
1921 Female, age 85, both hemispheres 14.9
2334 Male, age 80, both hemispheres 13.9
2338 Male, age 61, both hemispheres 13.5
Periaquaductal grey, anterior
nTPM: 16.1
2502 Female, age 75, unknown 17.0
1947 Male, age 18, unknown 15.8
1795 Male, age 51, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 18.3
2850 Male, age 76, both hemispheres 21.9
1840 Male, age 53, unknown 20.5
1831 Male, age 72, unknown 15.5
2464 Female, age 72, unknown 15.3
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 21.2
2053 Male, age 18, unknown 17.3
2272 Male, age 74, both hemispheres 13.4
Pretectal area
nTPM: 19.0
1816 Male, age 51, unknown 24.6
1944 Female, age 72, unknown 24.1
1817 Female, age 42, unknown 23.2
2007 Male, age 72, unknown 20.4
1815 Male, age 53, unknown 19.5
2667 Female, age 75, unknown 17.8
2224 Female, age 72, unknown 16.7
2407 Male, age 75, both hemispheres 16.1
2273 Male, age 74, both hemispheres 15.8
2316 Male, age 76, right hemisphere 15.5
2825 Male, age 18, unknown 15.2
Red nucleus
nTPM: 15.0
2785 Male, age 18, unknown 16.6
2503 Female, age 72, unknown 16.3
2588 Male, age 74, left hemisphere 16.0
2725 Female, age 75, unknown 15.8
1821 Female, age 72, unknown 15.7
1954 Female, age 42, unknown 15.7
1865 Male, age 51, unknown 15.5
2823 Male, age 76, right hemisphere 14.4
2769 Male, age 72, unknown 14.2
1904 Male, age 53, unknown 13.8
2227 Male, age 72, unknown 13.7
2584 Male, age 75, left hemisphere 12.7
Substantia nigra
nTPM: 15.4
1889 Female, age 72, unknown 19.5
2665 Male, age 74, both hemispheres 17.3
1941 Male, age 53, unknown 15.3
2583 Male, age 75, right hemisphere 15.1
2590 Female, age 75, unknown 15.1
2699 Male, age 18, unknown 15.0
2409 Female, age 72, unknown 14.9
2241 Male, age 72, unknown 14.3
1851 Male, age 51, unknown 14.2
1916 Female, age 42, unknown 13.7
Superior colliculus
nTPM: 17.5
2087 Female, age 72, unknown 20.3
1995 Male, age 72, unknown 18.8
1796 Male, age 53, unknown 17.5
2261 Male, age 18, unknown 17.4
2587 Male, age 74, left hemisphere 17.2
2668 Female, age 75, unknown 17.0
1839 Male, age 51, unknown 16.8
1895 Male, age 76, right hemisphere 16.8
1913 Female, age 42, unknown 16.5
2664 Male, age 75, both hemispheres 16.5
Ventral tegmental area
nTPM: 14.5
2410 Female, age 72, unknown 15.9
2223 Female, age 72, unknown 15.5
2218 Male, age 76, both hemispheres 14.7
2021 Male, age 53, unknown 14.0
1942 Male, age 51, unknown 13.5
1915 Female, age 42, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 27.1
Min nTPM: 10.7
Std nTPM: 3.1
Median nTPM: 15.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 24.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 23.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 22.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 22.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 22.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 22.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 21.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 41.0
Min nTPM: 22.9
Sample A Female 35.3
Sample B Female 22.9
Sample C Male 41.0
Sample D Male 28.4
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 24.3
Min nTPM: 23.7
Sample B Female 23.9
Sample C Male 23.7
Sample D Male 24.3
Substantia nigra
nTPM: 25.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.4
Sample A Female 23.4
Sample B Female 24.2
Sample C Male 25.6
Sample D Male 27.7
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 37.8
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 28.0
Sample C Male 37.8
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 35.2
Min nTPM: 24.6
Sample A Male 24.6
Sample B Male 29.5
Sample C Female 30.8
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69289471 Antisense, RP_050407_03_C08, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.