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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:19.6 nTPM
GTEx:19.6 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:35.2 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 19.6
Samples: 105

Max nTPM: 32.3
Min nTPM: 11.4
Std nTPM: 4.4
Median nTPM: 0.0
506_1 65 years, male 32.3
172_1 72 years, female 30.1
237_1 82 years, male 29.8
218_1 71 years, female 27.4
321_1 62 years, female 26.9
353_1 82 years, female 26.4
316_1 62 years, male 26.1
352_1 62 years, male 26.0
243_1 75 years, male 25.8
347_1 72 years, male 25.6
355_1 70 years, female 25.4
177_1 74 years, male 25.2
386_1 76 years, male 25.1
173_1 67 years, male 24.9
350_1 84 years, female 24.9
375_1 74 years, female 24.9
452_1 88 years, female 24.8
317_1 60 years, male 24.5
396_1 62 years, male 24.3
377_1 82 years, female 24.0
335_1 73 years, female 23.6
356_1 87 years, female 23.5
99_1 64 years, male 23.3
447_1 81 years, male 23.0
324_1 76 years, male 22.8
293_1 68 years, female 22.6
295_1 61 years, female 22.5
349_1 83 years, male 22.5
320_1 89 years, female 22.3
319_1 81 years, male 22.2
379_1 60 years, male 22.1
480_1 63 years, male 22.1
351_1 91 years, male 21.9
2_1 77 years, female 21.8
229_1 69 years, female 21.8
41_1 94 years, female 21.4
348_1 84 years, male 21.3
318_1 68 years, male 21.2
404_1 82 years, female 21.2
6_1 73 years, female 21.1
264_1 73 years, female 20.9
354_1 81 years, female 20.9
292_1 71 years, male 20.6
425_1 59 years, female 20.6
405_1 91 years, male 20.4
120_1 70 years, female 20.3
163_1 78 years, male 20.2
291_1 76 years, male 20.2
307_1 66 years, female 20.2
251_1 78 years, male 20.1
376_1 75 years, female 19.9
115_1 83 years, male 19.8
266_1 85 years, male 19.7
288_1 66 years, female 19.7
406_1 79 years, male 19.5
4_1 88 years, female 19.1
286_1 68 years, female 19.1
17_1 71 years, male 19.0
384_1 83 years, male 18.5
35_1 74 years, female 18.4
9_1 66 years, female 17.9
254_1 77 years, female 17.8
322_1 76 years, male 17.7
42_1 85 years, male 17.6
189_1 76 years, male 17.5
490_1 67 years, female 17.5
142_1 61 years, female 17.4
145_1 84 years, male 17.4
32_1 67 years, male 17.3
526_1 61 years, male 17.0
314_1 67 years, male 16.9
517_1 88 years, male 16.9
43_1 64 years, female 16.8
153_1 70 years, female 16.5
265_1 87 years, male 16.5
117_1 61 years, male 16.4
246_1 77 years, male 16.3
119_1 70 years, female 16.2
18_1 88 years, male 16.1
311_1 78 years, male 16.1
415_1 77 years, female 16.0
81_1 67 years, male 15.8
518_1 75 years, female 15.8
109_1 81 years, female 15.7
313_1 79 years, female 15.7
139_1 64 years, female 15.5
394_1 75 years, female 15.3
503_1 68 years, male 15.1
217_1 76 years, male 15.0
468_1 89 years, male 14.7
413_1 59 years, female 14.6
126_1 63 years, male 14.5
137_1 83 years, male 14.4
315_1 62 years, female 13.9
389_1 86 years, female 13.9
466_1 57 years, female 13.8
499_1 55 years, female 13.3
501_1 88 years, male 13.1
162_1 79 years, female 13.0
491_1 89 years, female 12.5
414_1 84 years, female 12.1
89_1 63 years, male 11.8
149_1 88 years, male 11.7
495_1 57 years, female 11.5
308_1 70 years, female 11.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 17.6
FF:10030-101E3 24-65 years, mixed 17.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.6
Pig sample Sample description nTPM
Retina
nTPM: 17.6
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.2
Sample A Female 16.7
Sample B Female 20.4
Sample C Male 17.1
Sample D Male 16.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.2
Mouse sample Sample description nTPM
Retina
nTPM: 35.3
Samples: 4

Max nTPM: 40.2
Min nTPM: 29.3
Sample A Male 36.9
Sample B Male 34.6
Sample C Female 29.3
Sample D Female 40.2

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by the Knut & Alice Wallenberg Foundation.