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RAB10
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.3 nTPM
HPA:46.3 nTPM
GTEx:30.8 nTPM
FANTOM5:110.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA045611
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 46.3
overview
Male, age 65
Small intestine sample 232
nTPM: 44.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 47.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 43.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 49.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 30.8
Samples: 187

Max nTPM: 49.3
Min nTPM: 13.7
Std nTPM: 7.0
Median nTPM: 30.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 49.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 48.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 48.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 46.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 45.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 44.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 44.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 44.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 44.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 43.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 43.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 43.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 42.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 41.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 41.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 41.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 40.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 40.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 40.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 39.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 39.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 39.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 39.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 39.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 39.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 38.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 38.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 38.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 38.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 38.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 37.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 37.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 37.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 37.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 36.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 36.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 36.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 36.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 36.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 36.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 36.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 35.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 35.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 35.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 35.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 35.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 35.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 35.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 35.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 35.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 35.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 35.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 35.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 35.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 34.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 34.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 34.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 34.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 34.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 34.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 33.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 33.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 33.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 33.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 33.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 33.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 33.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 33.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 33.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 33.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 32.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 32.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 32.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 31.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 31.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 31.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 31.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 31.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 31.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 31.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 31.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 31.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 31.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 31.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 31.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 31.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 31.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 30.8
GTEX-1192X-2526-SM-59868 50-59 years, male 30.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 30.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 30.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 30.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 30.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 30.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 30.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 30.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 30.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 29.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 29.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 29.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 29.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 29.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 29.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 29.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 29.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 29.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 29.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 29.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 29.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 29.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 29.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 28.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 28.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 28.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 28.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 28.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 28.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 28.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 28.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 28.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 28.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 28.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 27.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 27.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 27.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 27.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 27.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 27.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 27.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 27.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 27.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 26.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 26.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 26.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 26.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 26.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 26.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 26.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 26.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 26.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 26.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 26.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 25.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 25.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 25.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 25.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 25.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 25.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 25.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 25.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 25.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 25.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 25.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 24.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 24.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 24.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 24.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 24.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 23.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 23.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 23.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 22.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 22.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 22.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 22.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 22.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 22.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 21.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 21.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 21.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 21.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 21.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 20.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 20.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 20.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 20.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 20.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 20.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 19.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 19.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 18.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 18.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 18.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 17.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 15.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 14.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 13.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 110.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 110.8
FF:10024-101D6 15,40,85 years, mixed 110.8

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