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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:70.5 nTPM
GTEx:70.5 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:70.4 nTPM
Mouse:120.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 70.5
Samples: 105

Max nTPM: 115.7
Min nTPM: 37.2
Std nTPM: 13.5
Median nTPM: 0.0
218_1 71 years, female 115.7
379_1 60 years, male 102.9
237_1 82 years, male 97.6
386_1 76 years, male 96.5
375_1 74 years, female 96.0
319_1 81 years, male 95.7
452_1 88 years, female 91.9
506_1 65 years, male 90.6
376_1 75 years, female 90.4
320_1 89 years, female 87.2
377_1 82 years, female 86.8
243_1 75 years, male 86.7
322_1 76 years, male 86.7
354_1 81 years, female 85.3
447_1 81 years, male 85.3
229_1 69 years, female 84.9
316_1 62 years, male 84.5
352_1 62 years, male 84.5
264_1 73 years, female 83.2
349_1 83 years, male 81.4
292_1 71 years, male 81.0
335_1 73 years, female 80.6
163_1 78 years, male 80.2
394_1 75 years, female 79.7
353_1 82 years, female 79.6
295_1 61 years, female 79.5
172_1 72 years, female 78.6
318_1 68 years, male 77.9
404_1 82 years, female 77.8
266_1 85 years, male 76.9
286_1 68 years, female 76.8
396_1 62 years, male 76.8
173_1 67 years, male 76.2
355_1 70 years, female 76.1
351_1 91 years, male 75.8
406_1 79 years, male 75.4
350_1 84 years, female 74.9
321_1 62 years, female 74.7
6_1 73 years, female 74.0
189_1 76 years, male 73.8
347_1 72 years, male 73.7
177_1 74 years, male 73.5
348_1 84 years, male 73.3
405_1 91 years, male 73.0
217_1 76 years, male 72.2
35_1 74 years, female 72.0
526_1 61 years, male 71.4
288_1 66 years, female 71.3
251_1 78 years, male 71.1
517_1 88 years, male 71.1
503_1 68 years, male 71.0
17_1 71 years, male 70.4
265_1 87 years, male 70.2
518_1 75 years, female 70.1
4_1 88 years, female 69.9
246_1 77 years, male 69.5
324_1 76 years, male 69.3
356_1 87 years, female 68.5
311_1 78 years, male 68.2
389_1 86 years, female 68.2
425_1 59 years, female 68.2
501_1 88 years, male 66.9
314_1 67 years, male 66.5
293_1 68 years, female 66.4
142_1 61 years, female 65.3
480_1 63 years, male 65.0
307_1 66 years, female 64.7
384_1 83 years, male 63.7
415_1 77 years, female 63.3
254_1 77 years, female 63.0
468_1 89 years, male 63.0
99_1 64 years, male 62.9
41_1 94 years, female 62.8
414_1 84 years, female 62.8
137_1 83 years, male 62.6
317_1 60 years, male 62.0
291_1 76 years, male 61.5
43_1 64 years, female 61.2
153_1 70 years, female 61.2
308_1 70 years, female 60.9
315_1 62 years, female 60.4
120_1 70 years, female 60.0
499_1 55 years, female 59.9
313_1 79 years, female 59.4
145_1 84 years, male 58.3
81_1 67 years, male 57.7
115_1 83 years, male 57.0
413_1 59 years, female 57.0
18_1 88 years, male 56.9
109_1 81 years, female 56.8
42_1 85 years, male 56.7
466_1 57 years, female 55.8
126_1 63 years, male 54.7
139_1 64 years, female 54.4
9_1 66 years, female 54.2
117_1 61 years, male 54.1
490_1 67 years, female 53.7
32_1 67 years, male 53.3
495_1 57 years, female 53.3
2_1 77 years, female 52.9
162_1 79 years, female 52.8
491_1 89 years, female 46.5
119_1 70 years, female 46.0
149_1 88 years, male 39.4
89_1 63 years, male 37.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 91.5
FF:10030-101E3 24-65 years, mixed 91.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.4
Pig sample Sample description nTPM
Retina
nTPM: 70.4
Samples: 4

Max nTPM: 78.8
Min nTPM: 63.7
Sample A Female 72.0
Sample B Female 63.7
Sample C Male 78.8
Sample D Male 67.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.3
Mouse sample Sample description nTPM
Retina
nTPM: 120.3
Samples: 4

Max nTPM: 160.7
Min nTPM: 96.7
Sample A Male 115.8
Sample B Male 108.1
Sample C Female 160.7
Sample D Female 96.7

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