MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA:13.5 nTPM
GTEx:10.4 nTPM
FANTOM5:18.4 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:4.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
1830 Male, age 51, unknown 14.0
2586 Male, age 75, left hemisphere 14.0
2411 Female, age 72, unknown 13.6
2019 Male, age 18, unknown 13.5
2219 Male, age 76, both hemispheres 13.3
1870 Female, age 42, unknown 13.2
2828 Female, age 72, unknown 13.2
1827 Male, age 72, unknown 12.7
1833 Male, age 53, unknown 12.4
2666 Male, age 74, left hemisphere 12.3
Dorsal raphe nucleus
nTPM: 11.8
2047 Male, age 72, unknown 12.1
2016 Female, age 72, unknown 12.0
1828 Male, age 53, unknown 11.8
2750 Male, age 76, both hemispheres 11.8
2298 Female, age 72, unknown 11.6
Inferior colliculus
nTPM: 12.4
2849 Male, age 72, unknown 12.8
1890 Male, age 53, unknown 12.6
1848 Female, age 42, unknown 12.2
2097 Female, age 72, unknown 12.0
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Pedunculopontine tegmental nucleus
nTPM: 12.5
2334 Male, age 80, both hemispheres 12.7
2338 Male, age 61, both hemispheres 12.7
1921 Female, age 85, both hemispheres 12.0
Periaquaductal grey, anterior
nTPM: 12.3
1795 Male, age 51, unknown 12.5
1947 Male, age 18, unknown 12.2
2502 Female, age 75, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 11.9
2464 Female, age 72, unknown 12.7
1831 Male, age 72, unknown 12.3
1840 Male, age 53, unknown 11.6
2850 Male, age 76, both hemispheres 10.9
Periaquaductal grey, lateral
nTPM: 12.7
2272 Male, age 74, both hemispheres 13.6
2053 Male, age 18, unknown 12.8
2140 Male, age 76, both hemispheres 11.7
Pretectal area
nTPM: 12.5
2407 Male, age 75, both hemispheres 13.5
2316 Male, age 76, right hemisphere 13.3
2667 Female, age 75, unknown 13.0
2224 Female, age 72, unknown 12.8
2273 Male, age 74, both hemispheres 12.8
2007 Male, age 72, unknown 12.7
2825 Male, age 18, unknown 12.6
1944 Female, age 72, unknown 12.3
1815 Male, age 53, unknown 11.9
1817 Female, age 42, unknown 11.7
1816 Male, age 51, unknown 11.3
Red nucleus
nTPM: 13.5
1865 Male, age 51, unknown 14.6
2769 Male, age 72, unknown 14.5
2588 Male, age 74, left hemisphere 14.2
1904 Male, age 53, unknown 14.0
2823 Male, age 76, right hemisphere 13.6
2227 Male, age 72, unknown 13.5
2785 Male, age 18, unknown 13.5
2584 Male, age 75, left hemisphere 13.2
1954 Female, age 42, unknown 13.0
2503 Female, age 72, unknown 13.0
1821 Female, age 72, unknown 12.2
2725 Female, age 75, unknown 12.2
Substantia nigra
nTPM: 12.2
2590 Female, age 75, unknown 13.9
2583 Male, age 75, right hemisphere 13.7
2665 Male, age 74, both hemispheres 13.5
2699 Male, age 18, unknown 12.7
1941 Male, age 53, unknown 12.6
1851 Male, age 51, unknown 11.8
1889 Female, age 72, unknown 11.4
1916 Female, age 42, unknown 11.0
2409 Female, age 72, unknown 10.9
2241 Male, age 72, unknown 10.3
Superior colliculus
nTPM: 12.7
1913 Female, age 42, unknown 13.4
2664 Male, age 75, both hemispheres 13.3
1995 Male, age 72, unknown 13.0
2087 Female, age 72, unknown 13.0
2587 Male, age 74, left hemisphere 12.9
1895 Male, age 76, right hemisphere 12.6
1839 Male, age 51, unknown 12.5
1796 Male, age 53, unknown 12.3
2668 Female, age 75, unknown 11.9
2261 Male, age 18, unknown 11.6
Ventral tegmental area
nTPM: 12.1
2021 Male, age 53, unknown 12.9
1915 Female, age 42, unknown 12.5
2223 Female, age 72, unknown 12.2
2410 Female, age 72, unknown 12.1
1942 Male, age 51, unknown 11.9
2218 Male, age 76, both hemispheres 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 23.8
Min nTPM: 4.8
Std nTPM: 2.8
Median nTPM: 10.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 18.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 17.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 15.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 14.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 14.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 14.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 14.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.4
FF:10158-103A5 76 years, female 18.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 8.0
Min nTPM: 3.6
Sample A Female 8.0
Sample B Female 3.8
Sample C Male 4.7
Sample D Male 3.6
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 4.9
Min nTPM: 3.5
Sample B Female 3.9
Sample C Male 4.9
Sample D Male 3.5
Substantia nigra
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.4
Sample A Female 5.6
Sample B Female 4.4
Sample C Male 5.3
Sample D Male 4.8
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Female 5.1
Sample B Female 5.4
Sample C Male 4.2
Sample D Male 4.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.1
Sample A Male 4.3
Sample B Male 4.3
Sample C Female 4.1
Sample D Female 4.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74635481 Antisense, RP_060215_03_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.