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TISSUE PRIMARY DATA PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:14.5 nTPM
HPA:14.5 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Pig:4.7 nTPM
Allen mouse:0.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 14.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 13.8
2090 Male, age 80, both hemispheres 14.7
2188 Female, age 91, both hemispheres 14.2
2301 Female, age 85, both hemispheres 13.4
1984 Male, age 76, both hemispheres 13.0
Dorsal cochlear nucleus
nTPM: 12.8
2802 Male, age 74, right hemisphere 13.7
2378 Male, age 80, both hemispheres 13.2
2187 Female, age 91, both hemispheres 13.1
2370 Male, age 61, both hemispheres 12.3
2058 Male, age 76, both hemispheres 11.5
Dorsal tegmental nucleus
nTPM: 13.1
2358 Male, age 61, both hemispheres 14.3
2083 Male, age 80, both hemispheres 13.7
1936 Male, age 76, left hemisphere 12.3
2326 Male, age 74, both hemispheres 12.0
Dorsolateral tegmental area
nTPM: 13.1
2337 Male, age 61, both hemispheres 15.5
2360 Male, age 74, both hemispheres 13.5
2654 Male, age 80, both hemispheres 12.3
2141 Male, age 76, both hemispheres 12.2
2751 Female, age 85, both hemispheres 12.2
Kolliker-Fuse nucleus
nTPM: 13.1
2793 Female, age 91, left hemisphere 14.8
2163 Male, age 80, both hemispheres 12.8
2315 Male, age 76, right hemisphere 11.7
Lateral lemniscal nuclei
nTPM: 14.0
2320 Female, age 91, left hemisphere 15.1
2036 Male, age 80, both hemispheres 14.5
2746 Female, age 85, left hemisphere 13.8
2453 Male, age 74, right hemisphere 13.6
2169 Male, age 76, both hemispheres 13.2
Lateral parabrachial nucleus
nTPM: 13.3
2013 Male, age 80, both hemispheres 13.9
2790 Male, age 61, both hemispheres 13.6
2792 Male, age 76, both hemispheres 13.0
2139 Female, age 85, right hemisphere 12.6
Lateral vestibular nucleus
nTPM: 12.6
2311 Male, age 80, both hemispheres 13.5
2184 Male, age 76, both hemispheres 11.7
Locus coeruleus
nTPM: 11.7
2317 Female, age 72, unknown 12.6
2162 Male, age 80, both hemispheres 12.1
2720 Male, age 74, both hemispheres 11.9
2123 Female, age 91, both hemispheres 11.7
1980 Male, age 76, both hemispheres 11.4
2014 Male, age 55, unknown 11.4
2788 Male, age 74, unknown 11.0
Medial olivary nucleus
nTPM: 14.5
2851 Male, age 80, both hemispheres 15.0
2138 Female, age 91, both hemispheres 14.8
1943 Male, age 61, both hemispheres 14.6
1962 Male, age 76, both hemispheres 13.5
Medial parabrachial nucleus
nTPM: 13.0
2156 Male, age 61, both hemispheres 13.6
2170 Female, age 91, both hemispheres 13.2
2854 Male, age 80, both hemispheres 13.1
2463 Female, age 85, right hemisphere 12.8
2786 Male, age 76, both hemispheres 12.5
Medial periolivary nuclei
nTPM: 13.2
2081 Male, age 80, both hemispheres 14.5
2458 Female, age 91, both hemispheres 14.1
2171 Female, age 85, both hemispheres 12.9
2063 Male, age 76, both hemispheres 12.4
2791 Male, age 74, right hemisphere 12.1
Motor facial nucleus
nTPM: 13.6
2327 Male, age 80, both hemispheres 14.4
2795 Female, age 91, both hemispheres 14.0
2697 Female, age 85, both hemispheres 13.9
2365 Male, age 74, right hemisphere 13.4
2062 Male, age 76, both hemispheres 13.1
2126 Male, age 61, both hemispheres 12.8
Motor trigeminal nucleus
nTPM: 13.4
2321 Female, age 91, both hemispheres 14.4
2560 Male, age 74, both hemispheres 14.1
2079 Male, age 80, both hemispheres 13.9
2335 Male, age 61, both hemispheres 12.9
2309 Male, age 76, both hemispheres 11.6
Nuclei of the trapezoid body
nTPM: 13.2
2159 Male, age 61, both hemispheres 13.8
2368 Female, age 91, both hemispheres 13.8
2166 Male, age 80, both hemispheres 13.3
2735 Female, age 85, both hemispheres 12.9
1983 Male, age 76, both hemispheres 12.1
Paramedian reticular nucleus
nTPM: 12.2
2057 Male, age 80, both hemispheres 13.2
2050 Female, age 85, both hemispheres 13.0
2313 Male, age 61, both hemispheres 11.7
2052 Male, age 76, both hemispheres 11.0
Pontine nuclei
nTPM: 13.6
2787 Female, age 85, both hemispheres 14.9
2115 Male, age 80, left hemisphere 14.8
2319 Female, age 91, both hemispheres 14.3
2109 Female, age 72, unknown 13.7
1863 Male, age 55, unknown 13.3
1968 Male, age 76, left hemisphere 13.0
2454 Male, age 74, left hemisphere 12.5
2727 Male, age 61, right hemisphere 11.9
Pontine raphe nucleus
nTPM: 12.1
2122 Female, age 85, midline 12.6
2853 Male, age 76, midline 11.6
Posteroventral cochlear nucleus
nTPM: 13.5
2135 Female, age 91, both hemispheres 16.5
2341 Male, age 80, both hemispheres 14.5
2371 Male, age 61, both hemispheres 13.1
2070 Male, age 76, both hemispheres 11.9
2752 Female, age 85, both hemispheres 11.6
Principal sensory trigeminal nucleus
nTPM: 13.0
2367 Female, age 91, left hemisphere 15.0
2008 Male, age 80, left hemisphere 13.5
2158 Male, age 61, both hemispheres 12.6
2324 Male, age 76, both hemispheres 11.0
Reticular pontine nucleus, caudal
nTPM: 13.1
2332 Male, age 80, right hemisphere 13.6
2559 Male, age 74, both hemispheres 13.2
2092 Male, age 76, both hemispheres 12.9
2457 Female, age 91, both hemispheres 12.8
Reticular pontine nucleus, oral
nTPM: 13.1
2366 Female, age 91, both hemispheres 14.6
1939 Male, age 80, both hemispheres 13.0
2012 Female, age 85, both hemispheres 12.9
2361 Male, age 74, both hemispheres 12.7
2167 Male, age 76, both hemispheres 12.3
Reticulotegmental nucleus
nTPM: 13.2
2333 Male, age 80, both hemispheres 13.9
2322 Female, age 91, both hemispheres 13.6
2452 Male, age 74, both hemispheres 13.4
2325 Male, age 76, both hemispheres 12.1
Spinal trigeminal nucleus, oral
nTPM: 12.5
2164 Male, age 80, both hemispheres 12.8
1978 Male, age 76, both hemispheres 12.4
2737 Female, age 85, both hemispheres 12.3
Subcoeruleus area
nTPM: 12.9
2089 Male, age 76, left hemisphere 13.8
2369 Female, age 85, left hemisphere 13.0
2451 Male, age 74, both hemispheres 12.9
2323 Female, age 91, left hemisphere 12.6
1958 Male, age 80, both hemispheres 12.4
Superior olive
nTPM: 13.4
2329 Male, age 80, right hemisphere 14.0
2561 Female, age 91, both hemispheres 13.9
1875 Female, age 85, both hemispheres 13.4
2020 Male, age 76, both hemispheres 13.2
2364 Male, age 74, right hemisphere 12.3
Superior vestibular nucleus
nTPM: 11.9
2061 Male, age 76, both hemispheres 12.1
2015 Male, age 80, both hemispheres 12.0
2383 Male, age 74, both hemispheres 11.6
Ventral periolivary nuclei
nTPM: 13.4
2130 Female, age 85, both hemispheres 14.0
2794 Female, age 91, left hemisphere 13.6
2023 Male, age 76, both hemispheres 13.0
2165 Male, age 80, both hemispheres 13.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 13.2
2456 Female, age 91, both hemispheres 14.4
2840 Female, age 85, both hemispheres 13.5
2449 Male, age 74, both hemispheres 13.3
2161 Male, age 80, both hemispheres 13.1
1959 Male, age 76, both hemispheres 12.6
2359 Male, age 61, both hemispheres 12.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 15.1
FF:10165-103B3 76 years, female 16.2
FF:10182-103D2 60 years, female 13.9
Pons
Scaled Tags Per Million: 15.7
FF:10033-101E6 18-54 years, mixed 15.7

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 4.7
Pig sample Sample description nTPM
Pons
nTPM: 4.7
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.4
Sample A Female 4.9
Sample B Female 4.7
Sample C Male 4.9
Sample D Male 4.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.0
74635481 Antisense, RP_060215_03_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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