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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:284.5 nTPM
HPA:284.5 nTPM
GTEx:229.3 nTPM
FANTOM5:210.8 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 284.5
Sample id Sample description nTPM
Amygdala
nTPM: 284.5
2695 Female, age 67, right hemisphere 299.2
2514 Male, age 75, right hemisphere 289.8
1987 Female, age 91, left hemisphere 284.9
2814 Male, age 76, right hemisphere 283.4
2517 Female, age 94, left hemisphere 265.0
Basal amygdala
nTPM: 269.5
2609 Male, age 75, right hemisphere 297.3
2110 Male, age 80, left hemisphere 282.6
2243 Female, age 91, right hemisphere 276.2
1955 Male, age 76, both hemispheres 274.3
2685 Female, age 94, left hemisphere 252.2
2827 Female, age 67, right hemisphere 234.2
Central amygdala
nTPM: 277.4
2515 Male, age 75, right hemisphere 307.0
1905 Male, age 76, both hemispheres 281.6
2239 Male, age 80, left hemisphere 271.2
2826 Female, age 94, left hemisphere 265.7
2701 Female, age 91, right hemisphere 261.4
Corticomedial amygdala
nTPM: 277.3
2428 Male, age 75, right hemisphere 313.9
2829 Male, age 80, left hemisphere 287.3
2242 Female, age 91, right hemisphere 287.0
2429 Female, age 94, left hemisphere 277.0
2240 Male, age 76, both hemispheres 268.4
2535 Female, age 67, right hemisphere 230.2
Lateral amygdala
nTPM: 269.2
2516 Male, age 75, right hemisphere 299.2
1883 Male, age 76, both hemispheres 285.8
2534 Female, age 94, left hemisphere 259.7
2255 Female, age 91, right hemisphere 257.7
2830 Female, age 67, right hemisphere 256.8
2256 Male, age 80, left hemisphere 255.9
Stria terminalis, bed nucleus
nTPM: 260.3
2201 Male, age 74, unknown 266.6
2486 Female, age 94, both hemispheres 257.9
1974 Female, age 91, both hemispheres 256.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 229.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 229.3
Samples: 152

Max nTPM: 1486.2
Min nTPM: 84.0
Std nTPM: 132.8
Median nTPM: 198.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1486.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 719.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 521.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 515.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 480.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 438.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 422.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 417.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 414.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 362.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 335.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 325.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 320.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 320.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 320.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 311.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 299.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 296.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 296.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 291.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 290.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 289.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 286.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 285.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 285.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 280.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 279.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 275.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 272.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 270.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 270.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 270.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 269.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 262.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 262.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 261.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 251.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 248.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 245.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 245.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 244.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 243.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 243.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 241.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 241.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 238.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 238.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 236.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 233.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 232.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 230.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 223.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 223.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 222.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 220.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 219.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 217.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 217.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 215.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 214.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 212.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 211.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 211.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 210.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 210.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 209.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 207.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 206.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 204.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 203.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 202.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 201.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 199.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 198.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 198.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 198.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 197.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 197.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 196.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 196.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 195.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 194.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 194.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 194.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 192.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 192.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 191.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 191.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 190.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 190.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 187.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 186.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 186.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 186.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 186.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 186.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 185.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 185.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 184.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 184.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 183.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 180.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 180.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 180.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 179.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 178.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 178.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 177.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 177.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 176.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 174.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 172.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 171.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 171.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 168.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 167.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 165.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 165.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 165.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 165.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 164.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 164.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 162.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 160.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 159.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 156.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 156.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 154.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 153.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 152.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 151.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 150.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 149.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 145.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 143.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 142.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 136.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 125.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 124.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 124.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 122.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 121.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 119.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 118.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 115.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 84.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 210.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 210.8
FF:10151-102I7 76 years, female 210.8

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