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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:18.7 nTPM
HPA:18.7 nTPM
GTEx:48.1 nTPM
FANTOM5:49.4 Scaled Tags Per Million
Pig:5.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Amygdala
nTPM: 18.2
2514 Male, age 75, right hemisphere 19.3
2695 Female, age 67, right hemisphere 18.2
2517 Female, age 94, left hemisphere 18.1
1987 Female, age 91, left hemisphere 17.8
2814 Male, age 76, right hemisphere 17.8
Basal amygdala
nTPM: 18.2
2609 Male, age 75, right hemisphere 19.7
1955 Male, age 76, both hemispheres 18.9
2110 Male, age 80, left hemisphere 18.2
2243 Female, age 91, right hemisphere 17.9
2685 Female, age 94, left hemisphere 17.6
2827 Female, age 67, right hemisphere 16.6
Central amygdala
nTPM: 18.2
2701 Female, age 91, right hemisphere 19.2
1905 Male, age 76, both hemispheres 18.9
2239 Male, age 80, left hemisphere 18.8
2515 Male, age 75, right hemisphere 17.7
2826 Female, age 94, left hemisphere 16.4
Corticomedial amygdala
nTPM: 18.7
2428 Male, age 75, right hemisphere 19.7
2242 Female, age 91, right hemisphere 19.5
2429 Female, age 94, left hemisphere 19.1
2240 Male, age 76, both hemispheres 18.6
2829 Male, age 80, left hemisphere 18.3
2535 Female, age 67, right hemisphere 17.2
Lateral amygdala
nTPM: 18.4
2516 Male, age 75, right hemisphere 19.7
2256 Male, age 80, left hemisphere 19.2
2830 Female, age 67, right hemisphere 18.2
1883 Male, age 76, both hemispheres 18.1
2255 Female, age 91, right hemisphere 17.7
2534 Female, age 94, left hemisphere 17.7
Stria terminalis, bed nucleus
nTPM: 18.3
2201 Male, age 74, unknown 18.7
2486 Female, age 94, both hemispheres 18.6
1974 Female, age 91, both hemispheres 17.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 48.1
Samples: 152

Max nTPM: 118.7
Min nTPM: 24.1
Std nTPM: 13.9
Median nTPM: 44.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 118.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 94.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 91.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 88.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 85.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 73.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 72.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 71.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 69.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 68.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 68.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 67.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 67.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 66.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 62.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 61.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 61.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 61.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 60.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 60.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 59.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 59.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 59.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 58.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 57.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 57.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 56.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 55.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 55.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 55.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 54.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 54.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 54.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 53.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 52.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 52.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 51.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 50.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 50.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 50.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 49.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 49.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 49.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 49.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 48.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 48.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 47.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 47.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 47.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 47.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 46.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 46.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 46.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 46.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 46.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 46.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 44.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 44.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 44.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 44.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 44.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 44.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 44.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 43.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 43.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 43.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 42.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 42.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 42.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 42.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 42.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 41.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 41.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 41.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 41.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 40.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 40.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 40.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 40.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 39.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 39.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 39.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 39.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 39.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 39.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 39.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 39.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 39.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 38.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 38.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 38.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 38.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 38.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 38.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 38.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 37.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 37.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 37.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 37.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 37.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 36.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 36.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 36.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 36.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 36.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 36.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 36.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 35.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 35.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 35.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 35.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 34.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 34.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 33.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 33.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 33.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 33.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 30.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 30.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 29.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 27.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 26.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 25.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 24.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.4
FF:10151-102I7 76 years, female 49.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.6
Pig sample Sample description nTPM
Amygdala
nTPM: 5.6
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.0
Sample C Male 5.9
Sample D Male 5.2

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