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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Cells in glomeruli: Not detected
Cells in tubules: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4.1 nTPM
HPA:0.5 nTPM
GTEx:4.1 nTPM
FANTOM5:3.9 Scaled Tags Per Million

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA000685Antibody HPA001295Antibody CAB016760
Cells in glomeruli Not detectedNot detectedNot detected
Cells in tubules Not detectedNot detectedNot detected







KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 0.5
overview
Female, age 58
Kidney sample 55
nTPM: 0.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 0.4
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 0.4
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 1.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 0.1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 0.2
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 0.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 0.3
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.1
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 3.6
Samples: 85

Max nTPM: 20.7
Min nTPM: 0.0
Std nTPM: 4.3
Median nTPM: 2.0
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 20.7
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 20.5
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 17.6
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 15.9
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 14.5
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 10.8
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 9.4
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 9.2
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 8.3
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 8.2
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 7.3
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 7.3
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 6.8
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 6.1
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 6.0
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 5.5
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 5.2
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 5.1
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 4.9
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 4.8
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 4.5
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 4.3
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 4.2
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 4.2
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 4.1
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 3.9
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 3.9
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 3.8
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 3.7
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 3.7
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 3.7
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 3.4
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 2.8
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 2.8
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 2.8
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 2.7
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 2.6
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 2.5
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 2.4
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 2.4
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 2.3
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 2.2
GTEX-14C39-2126-SM-664OH 40-49 years, male 2.0
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 1.9
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1.9
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 1.9
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 1.8
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1.8
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 1.6
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1.6
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 1.6
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 1.5
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 1.4
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 1.4
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 1.3
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1.3
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 1.3
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 1.3
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 1.2
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 1.2
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 1.2
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 1.1
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 1.1
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1.1
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 1.0
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 0.9
GTEX-RN64-1626-SM-48FD7 50-59 years, male 0.9
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 0.7
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 0.7
GTEX-O5YV-1226-SM-EV795 60-69 years, female 0.7
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 0.5
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 0.5
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 0.5
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 0.5
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 0.4
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 0.4
GTEX-12696-0926-SM-5FQTV 60-69 years, male 0.3
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 0.3
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 0.3
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 0.3
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 0.3
GTEX-13112-2126-SM-5GCO4 50-59 years, male 0.2
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 0.2
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 0.1
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 0.0
Show allShow less
Kidney - Medulla
Average nTPM: 4.1
Samples: 4

Max nTPM: 14.8
Min nTPM: 0.2
Std nTPM: 6.1
Median nTPM: 0.7
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 14.8
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 1.2
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 0.2
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 0.2

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 3.9
FF:10017-101C8 60,62,63 years, female 3.9

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