We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCAMP1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SCAMP1
TISSUE PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
166.704
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.4 nTPM
HPA:21.4 nTPM
FANTOM5:165.0 Scaled Tags Per Million
Pig:60.9 nTPM
Allen mouse:1.3 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB079009
Pons mean intensity 166.704
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 91.985
Parabrachial nucleus 166.704
Principle sensory trigeminal nucleus 61.384
Locus coeruleus 80.346
Pontine nucleus 7.815
Vestibular nucleus 52.138
Pontine reticular nucleus, oral 39.323
Lateral lemniscus 54.747
Superior paraolivary nucleus 49.323

PONS - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 13.2
2188 Female, age 91, both hemispheres 14.7
1984 Male, age 76, both hemispheres 13.2
2301 Female, age 85, both hemispheres 13.2
2090 Male, age 80, both hemispheres 11.6
Dorsal cochlear nucleus
nTPM: 14.4
2802 Male, age 74, right hemisphere 16.6
2187 Female, age 91, both hemispheres 16.1
2058 Male, age 76, both hemispheres 14.4
2370 Male, age 61, both hemispheres 13.6
2378 Male, age 80, both hemispheres 11.6
Dorsal tegmental nucleus
nTPM: 13.5
2326 Male, age 74, both hemispheres 16.4
2083 Male, age 80, both hemispheres 15.9
1936 Male, age 76, left hemisphere 14.6
2358 Male, age 61, both hemispheres 7.3
Dorsolateral tegmental area
nTPM: 13.8
2751 Female, age 85, both hemispheres 18.4
2360 Male, age 74, both hemispheres 17.7
2654 Male, age 80, both hemispheres 14.6
2141 Male, age 76, both hemispheres 12.9
2337 Male, age 61, both hemispheres 5.6
Kolliker-Fuse nucleus
nTPM: 14.4
2163 Male, age 80, both hemispheres 17.9
2315 Male, age 76, right hemisphere 14.0
2793 Female, age 91, left hemisphere 11.3
Lateral lemniscal nuclei
nTPM: 16.0
2036 Male, age 80, both hemispheres 18.2
2169 Male, age 76, both hemispheres 17.6
2453 Male, age 74, right hemisphere 16.6
2746 Female, age 85, left hemisphere 14.8
2320 Female, age 91, left hemisphere 12.7
Lateral parabrachial nucleus
nTPM: 14.3
2139 Female, age 85, right hemisphere 16.0
2790 Male, age 61, both hemispheres 14.6
2013 Male, age 80, both hemispheres 14.3
2792 Male, age 76, both hemispheres 12.4
Lateral vestibular nucleus
nTPM: 12.2
2184 Male, age 76, both hemispheres 12.9
2311 Male, age 80, both hemispheres 11.4
Locus coeruleus
nTPM: 21.4
2014 Male, age 55, unknown 29.2
2788 Male, age 74, unknown 23.9
2317 Female, age 72, unknown 20.6
2123 Female, age 91, both hemispheres 20.1
2720 Male, age 74, both hemispheres 19.2
2162 Male, age 80, both hemispheres 19.1
1980 Male, age 76, both hemispheres 17.5
Medial olivary nucleus
nTPM: 11.8
2138 Female, age 91, both hemispheres 15.3
1962 Male, age 76, both hemispheres 12.1
1943 Male, age 61, both hemispheres 10.4
2851 Male, age 80, both hemispheres 9.2
Medial parabrachial nucleus
nTPM: 14.0
2170 Female, age 91, both hemispheres 16.0
2854 Male, age 80, both hemispheres 14.1
2786 Male, age 76, both hemispheres 14.0
2463 Female, age 85, right hemisphere 13.9
2156 Male, age 61, both hemispheres 11.9
Medial periolivary nuclei
nTPM: 17.0
2063 Male, age 76, both hemispheres 21.9
2171 Female, age 85, both hemispheres 20.9
2791 Male, age 74, right hemisphere 19.2
2081 Male, age 80, both hemispheres 11.8
2458 Female, age 91, both hemispheres 11.2
Motor facial nucleus
nTPM: 15.8
2062 Male, age 76, both hemispheres 22.3
2365 Male, age 74, right hemisphere 16.0
2795 Female, age 91, both hemispheres 15.6
2327 Male, age 80, both hemispheres 13.8
2126 Male, age 61, both hemispheres 13.7
2697 Female, age 85, both hemispheres 13.4
Motor trigeminal nucleus
nTPM: 12.8
2309 Male, age 76, both hemispheres 15.0
2560 Male, age 74, both hemispheres 13.5
2079 Male, age 80, both hemispheres 12.8
2321 Female, age 91, both hemispheres 12.3
2335 Male, age 61, both hemispheres 10.3
Nuclei of the trapezoid body
nTPM: 18.9
2735 Female, age 85, both hemispheres 22.9
1983 Male, age 76, both hemispheres 22.7
2159 Male, age 61, both hemispheres 18.9
2368 Female, age 91, both hemispheres 16.0
2166 Male, age 80, both hemispheres 14.0
Paramedian reticular nucleus
nTPM: 19.2
2050 Female, age 85, both hemispheres 20.8
2313 Male, age 61, both hemispheres 20.4
2057 Male, age 80, both hemispheres 18.1
2052 Male, age 76, both hemispheres 17.3
Pontine nuclei
nTPM: 17.8
2727 Male, age 61, right hemisphere 23.9
1863 Male, age 55, unknown 23.6
2454 Male, age 74, left hemisphere 18.6
2109 Female, age 72, unknown 18.3
1968 Male, age 76, left hemisphere 18.0
2787 Female, age 85, both hemispheres 16.0
2319 Female, age 91, both hemispheres 13.8
2115 Male, age 80, left hemisphere 9.8
Pontine raphe nucleus
nTPM: 19.6
2122 Female, age 85, midline 21.0
2853 Male, age 76, midline 18.3
Posteroventral cochlear nucleus
nTPM: 15.1
2752 Female, age 85, both hemispheres 21.7
2371 Male, age 61, both hemispheres 14.8
2135 Female, age 91, both hemispheres 14.4
2070 Male, age 76, both hemispheres 12.7
2341 Male, age 80, both hemispheres 12.0
Principal sensory trigeminal nucleus
nTPM: 15.6
2008 Male, age 80, left hemisphere 20.0
2158 Male, age 61, both hemispheres 15.0
2324 Male, age 76, both hemispheres 13.7
2367 Female, age 91, left hemisphere 13.7
Reticular pontine nucleus, caudal
nTPM: 13.8
2559 Male, age 74, both hemispheres 15.1
2092 Male, age 76, both hemispheres 14.7
2457 Female, age 91, both hemispheres 13.4
2332 Male, age 80, right hemisphere 12.1
Reticular pontine nucleus, oral
nTPM: 18.8
2361 Male, age 74, both hemispheres 31.1
1939 Male, age 80, both hemispheres 17.8
2012 Female, age 85, both hemispheres 17.5
2167 Male, age 76, both hemispheres 15.4
2366 Female, age 91, both hemispheres 12.4
Reticulotegmental nucleus
nTPM: 14.6
2325 Male, age 76, both hemispheres 17.4
2322 Female, age 91, both hemispheres 14.8
2452 Male, age 74, both hemispheres 13.2
2333 Male, age 80, both hemispheres 13.1
Spinal trigeminal nucleus, oral
nTPM: 16.4
2737 Female, age 85, both hemispheres 18.5
1978 Male, age 76, both hemispheres 15.8
2164 Male, age 80, both hemispheres 15.0
Subcoeruleus area
nTPM: 16.3
1958 Male, age 80, both hemispheres 18.3
2323 Female, age 91, left hemisphere 17.0
2369 Female, age 85, left hemisphere 16.1
2451 Male, age 74, both hemispheres 15.9
2089 Male, age 76, left hemisphere 14.4
Superior olive
nTPM: 15.8
1875 Female, age 85, both hemispheres 21.4
2364 Male, age 74, right hemisphere 18.7
2020 Male, age 76, both hemispheres 15.0
2329 Male, age 80, right hemisphere 12.7
2561 Female, age 91, both hemispheres 11.4
Superior vestibular nucleus
nTPM: 15.8
2383 Male, age 74, both hemispheres 20.5
2015 Male, age 80, both hemispheres 16.0
2061 Male, age 76, both hemispheres 10.9
Ventral periolivary nuclei
nTPM: 15.7
2023 Male, age 76, both hemispheres 16.7
2130 Female, age 85, both hemispheres 16.7
2165 Male, age 80, both hemispheres 16.1
2794 Female, age 91, left hemisphere 13.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 14.8
2449 Male, age 74, both hemispheres 17.7
1959 Male, age 76, both hemispheres 16.9
2840 Female, age 85, both hemispheres 15.7
2161 Male, age 80, both hemispheres 13.7
2456 Female, age 91, both hemispheres 13.7
2359 Male, age 61, both hemispheres 11.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 165.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 134.4
FF:10182-103D2 60 years, female 165.4
FF:10165-103B3 76 years, female 103.4
Pons
Scaled Tags Per Million: 165.0
FF:10033-101E6 18-54 years, mixed 165.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.9
Pig sample Sample description nTPM
Pons
nTPM: 60.9
Samples: 4

Max nTPM: 73.8
Min nTPM: 45.8
Sample A Female 73.8
Sample B Female 45.8
Sample C Male 64.1
Sample D Male 60.0

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.3
69169714 Antisense, RP_050321_04_B01, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.